PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020671689.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 645aa    MW: 69741.6 Da    PI: 4.9772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020671689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.77.6e-1372586281374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++ ++ + l++++s las++g +m+++a yf+eALa+r++         l+p+++ + +s+ +   +  f+e +P+lkf+h
  XP_020671689.1 258 LVHALMACAEAVQQENYKASDILVKQISMLASSQGGAMRKVAGYFAEALARRIYC--------LNPQQDCSLDSAFSDILQMHFYESCPYLKFAH 344
                     689***************************************************9........88888886666666666666************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g +rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++++++l+++g++La++A++++v+fe++ +va++l+dle
  XP_020671689.1 345 FTANQAILEAFAGYRRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPQPDNTDALQQVGWKLAQLADTIHVDFEYRGFVANSLADLE 439
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     + +L+  +         E++a+n+v++lh ll+++++le+    vL +v+ l+P++v++veq+a+hn+++F++rf+eal++ys++fdsle +  +
  XP_020671689.1 440 PYMLESPSsansgsdePEVVAINSVFELHGLLARPGALEK----VLGTVRALKPRIVTIVEQDANHNAGPFMDRFTEALHFYSTMFDSLEGGGIA 530
                     ****6555555667679***********************....*********************************************999778 PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                     + ++++++++++lgr+i+nvvaceg+er+erhetl++Wr r+++a F+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++S
  XP_020671689.1 531 DGQQDQFMSEVYLGRQICNVVACEGTERTERHETLSQWRGRMRDADFEPVHLGSNAFKQASMLLALFAgGDGYRVEEKDGCLTLGWHTRPLIATS 625
                     88********************************************************************************************* PP

            GRAS 372 aWr 374
                     aWr
  XP_020671689.1 626 AWR 628
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    
MKRENMDGVA RGGIVRNVAP APARMAMMGK AKMMGFDEET EDEHLAVLGY KVRSSDMEIV  60
AQKLQQLEMA MGGGAPQDDA LLNHLAADTV HYNPSDISNW LESMLSELST PPPPLPPVMH  120
PNSGVFDFPP DPMSGHSSSN FFNSAETLAT MESSTVTSIE LSTPSAAMLP ADYSLRSNSA  180
GGNRAVYGSE TQMENTGPRD RKRMKTSSSS STSRGGSGGV IGRSAPAIGS MSTSTCGSEV  240
SSAMPVVMED TQEVGIRLVH ALMACAEAVQ QENYKASDIL VKQISMLASS QGGAMRKVAG  300
YFAEALARRI YCLNPQQDCS LDSAFSDILQ MHFYESCPYL KFAHFTANQA ILEAFAGYRR  360
VHVIDFSMKQ GMQWPALMQA LALRPGGPPS FRLTGIGPPQ PDNTDALQQV GWKLAQLADT  420
IHVDFEYRGF VANSLADLEP YMLESPSSAN SGSDEPEVVA INSVFELHGL LARPGALEKV  480
LGTVRALKPR IVTIVEQDAN HNAGPFMDRF TEALHFYSTM FDSLEGGGIA DGQQDQFMSE  540
VYLGRQICNV VACEGTERTE RHETLSQWRG RMRDADFEPV HLGSNAFKQA SMLLALFAGG  600
DGYRVEEKDG CLTLGWHTRP LIATSAWRPA GSGESFSAPA ASDAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein