PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz13g09180.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

AP2

Protein Properties

Length: 1343aa MW: 138015 Da PI: 6.4574

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz13g09180.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.6	3.6e-09	390	439	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+w+k++ +W + ++ r ++ + g++ eeAa+a+++a++ ++g Cz13g09180.t1 390 SRYRGVSWNKRTLKWQVTLYA------RgRYRYFGSYTNQEEAARAYDKAALVWKG 439 79************99666......33999999*************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1343 aa Download sequence
MMAYEKSKDD VNEYALRLAG SWLPHVEVEV GGITSILLGG HTSQSSNVYV QCQCSLCTNK 60 EPHVGLNTLE EQLEHVTGED LPDSVEEANK VCRMYLFVRP PEDPNRRIPL GLYLKQQAEC 120 MGGSGLIGSR LWIYWYDDPK VINHVSYGTW YKAEITGYDG HTGEHVVRYF VDNTLERIFL 180 PCTHVHFGRS APPPGEAPVM TPVSKARSPD QGVVKSGRGD DVLGGGADVG AKARSPDSQK 240 VGRGGKRSAA MGSAEKSEGK RARGGAADVG GIPSAFATAG LPDIAPLGDA TANPVKGEPV 300 ALADQLSGHA DDLAAPMALA QGLEAVQEGL VDGSDLLPEG AADVSATDDA TDGDDLRNTT 360 DQAVVPEVAV AAAGARAVAP PPGAPDHKTS RYRGVSWNKR TLKWQVTLYA RGRYRYFGSY 420 TNQEEAARAY DKAALVWKGP QAALNFPAEG YRSAQVQQQI MEAAAAAAAE GQPVAVPGVP 480 AAAAAATAPA TQESTGVVSL QPVASTTELK DEVVNVEGVS LPVLEGGDQT GGDNGVEGDD 540 DYGVSYGDLD AVNDQLGEQL GAVGSGTLDL SRKKRRKKAA SKLFTRKKIH KADPLLDAIP 600 PVNAPGLVYV KRRGRPPKGS LPAFVPEAED ASYPEGSGVG VEGEDASEGL DTEGNVRADL 660 GLNDTEATGN GRRSTREAAQ KGMRRLAAAM ASVVNARRDG LWARLMERAG DGISDDENGA 720 DGTLAHYIAP SLPSPRGRGR GRGRGRGRGR GRGYVAPDVD DADGGVGGHD AVNEAADEGG 780 ERGDDMDIMP EDAAAALLSM QDCIPGASET SWKKSSKTER EDEQVTVPTG RRRGRPPGRG 840 RGRIAARGTR GGRGRGRGRG RRSGPPPSAA AYNARAAVAA QNPWAMMNPW MNPKAAMAAG 900 GYPGADDSDA EDPQAAYAAW MNSPYYAQAY AAQMAAFFSN PAMAGMASAM AASSAGNQWP 960 GMEATMAWQN QYQMMLQHMH RQAMTSQWPQ GGVDEDDDES EESDNESHGQ EVLAAAKAQH 1020 EKKAPSGVDQ DALRRSMLAA QMGKAGLPPP VSGAPGGMGV NALMAHMGGA RKSSSSSKAA 1080 PAGAMAAGGV PGMTSSKGSL KKPVITTANA TMPASSSGMG LPGRATAPVP AAQVAAAQSA 1140 AQVAAAQAQA LAAVKNSGMG AVPKLAPPAK LYPMPPNPNL IGQAHGTMKF PPGPSGIANR 1200 TAAPVPGVPA AVASAAAAAA RLGAPPLTTN VGGLPPRPPS APATAKAPAG PSHHSGGATN 1260 ATPVYSREGD GISGPCTPQP GPSPVKAAGP ADAQAVPPAA AGPQQQPHVV PQLSQPAVAA 1320 AVSQPPMHPA APAVAVSGPQ AQ*

Sequence ? help Back to Top

Protein Sequence Length: 1343 aa Download sequence

MMAYEKSKDD VNEYALRLAG SWLPHVEVEV GGITSILLGG HTSQSSNVYV QCQCSLCTNK  60
EPHVGLNTLE EQLEHVTGED LPDSVEEANK VCRMYLFVRP PEDPNRRIPL GLYLKQQAEC  120
MGGSGLIGSR LWIYWYDDPK VINHVSYGTW YKAEITGYDG HTGEHVVRYF VDNTLERIFL  180
PCTHVHFGRS APPPGEAPVM TPVSKARSPD QGVVKSGRGD DVLGGGADVG AKARSPDSQK  240
VGRGGKRSAA MGSAEKSEGK RARGGAADVG GIPSAFATAG LPDIAPLGDA TANPVKGEPV  300
ALADQLSGHA DDLAAPMALA QGLEAVQEGL VDGSDLLPEG AADVSATDDA TDGDDLRNTT  360
DQAVVPEVAV AAAGARAVAP PPGAPDHKTS RYRGVSWNKR TLKWQVTLYA RGRYRYFGSY  420
TNQEEAARAY DKAALVWKGP QAALNFPAEG YRSAQVQQQI MEAAAAAAAE GQPVAVPGVP  480
AAAAAATAPA TQESTGVVSL QPVASTTELK DEVVNVEGVS LPVLEGGDQT GGDNGVEGDD  540
DYGVSYGDLD AVNDQLGEQL GAVGSGTLDL SRKKRRKKAA SKLFTRKKIH KADPLLDAIP  600
PVNAPGLVYV KRRGRPPKGS LPAFVPEAED ASYPEGSGVG VEGEDASEGL DTEGNVRADL  660
GLNDTEATGN GRRSTREAAQ KGMRRLAAAM ASVVNARRDG LWARLMERAG DGISDDENGA  720
DGTLAHYIAP SLPSPRGRGR GRGRGRGRGR GRGYVAPDVD DADGGVGGHD AVNEAADEGG  780
ERGDDMDIMP EDAAAALLSM QDCIPGASET SWKKSSKTER EDEQVTVPTG RRRGRPPGRG  840
RGRIAARGTR GGRGRGRGRG RRSGPPPSAA AYNARAAVAA QNPWAMMNPW MNPKAAMAAG  900
GYPGADDSDA EDPQAAYAAW MNSPYYAQAY AAQMAAFFSN PAMAGMASAM AASSAGNQWP  960
GMEATMAWQN QYQMMLQHMH RQAMTSQWPQ GGVDEDDDES EESDNESHGQ EVLAAAKAQH  1020
EKKAPSGVDQ DALRRSMLAA QMGKAGLPPP VSGAPGGMGV NALMAHMGGA RKSSSSSKAA  1080
PAGAMAAGGV PGMTSSKGSL KKPVITTANA TMPASSSGMG LPGRATAPVP AAQVAAAQSA  1140
AQVAAAQAQA LAAVKNSGMG AVPKLAPPAK LYPMPPNPNL IGQAHGTMKF PPGPSGIANR  1200
TAAPVPGVPA AVASAAAAAA RLGAPPLTTN VGGLPPRPPS APATAKAPAG PSHHSGGATN  1260
ATPVYSREGD GISGPCTPQP GPSPVKAAGP ADAQAVPPAA AGPQQQPHVV PQLSQPAVAA  1320
AVSQPPMHPA APAVAVSGPQ AQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	572	578	RKKRRKK
2	572	588	RKKRRKKAASKLFTRKK
3	573	577	KKRRK
4	573	578	KKRRKK
5	736	745	RGRGRGRGRG
6	736	746	RGRGRGRGRGR
7	738	747	RGRGRGRGRG
8	738	748	RGRGRGRGRGR
9	740	749	RGRGRGRGRG
10	740	750	RGRGRGRGRGR
11	742	751	RGRGRGRGRG
12	742	752	RGRGRGRGRGR
13	744	753	RGRGRGRGRG
14	850	859	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	3e-09	AP2 family protein