PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz11g01240.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

AP2

Protein Properties

Length: 1217aa MW: 128920 Da PI: 6.6928

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz11g01240.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	25	73	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GV+wdkk+ rW+++ g ++k++ lg+f+ a +Aa+a++ +l+g Cz11g01240.t1 25 QYRGVFWDKKTRRWRCQ---L---GyQSKKIFLGYFDDASDAARAYDTKLVELRG 73 69*************...4...5567******************9999998 PP
2	AP2	40.1	9.2e-13	305	352	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+wdkk+ rW++++ + +k++ lg+f ++eAa a++ +l+g Cz11g01240.t1 305 YRGVFWDKKSRRWRCQLGHK-----NKKIFLGYFSDPQEAAHAYDVKLVELHG 352 9*************8884.....7******************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1217 aa Download sequence
MAEEDPELTH RLDVSDAERE RLKRQYRGVF WDKKTRRWRC QLGYQSKKIF LGYFDDASDA 60 ARAYDTKLVE LRGAAARTNF PITDYLELLQ SLPSQRAAPR PAAQSQLQQQ HLDDDDPHGS 120 VKQHAAAVRR TSNPGAGQDV GRGGGRGASS YLPGTITSVP LLPPNAYPRN HWGSQEEAEM 180 YSAARGELTA AGEDQGGQGG EYPDVAEQRA AGQQYVDEQD EDDPHTVDPE RAWVDAQRAA 240 RMHGHSAAAS AALLDVAPGG DYDVSRHLLE EQQPSSDRRS RSKRRTASYA ELDDVAAEEE 300 RPHSYRGVFW DKKSRRWRCQ LGHKNKKIFL GYFSDPQEAA HAYDVKLVEL HGRTAKTNFP 360 VTEYIADDGS LGPAATARGA DVAPRHADDR DTARRNGYNS SNSAGLAARR GLSDTDFGRV 420 AKGLPKLPSD VLDRDWGADA QPWDTRHMDQ RQMQHMTDDT MTKRRRVDQS PPPILDYHAG 480 AGVTAAAAAD GGGGAAGGAH GLITRRPTST SGGGGNGGNW QSPFSEQGAE DTSGGAGSGS 540 LSNLGRTRSV GEEVLEPMHR LGSGHRVVET PSVMPVLPSR GNTAVATGTV RLPPLAPGGG 600 SISPVGTAAG SMHGGYAGLN VGDARGSIGH LNRLPSSEVR AVQALSSLSE HGHHHPHTGH 660 VHHGHMQHVH HHGMHTAHQG SSYGMHNTGM SVFGGPGRLE HTRVPPAHAA HYDYGMLQHY 720 SGMDRGRGDG GWGHTTAAGH THSSTSPLGV TQGLSLSRFG SSEVGAAQAL SGLIASGSDG 780 TYHPYHGHSS PSPTMMTRGH GAHSPIMAAG GTAAGRGAHM HVHHAMRGDV GGGLSGMQDN 840 EDSLTHTHWP QHHGIHGVGH AGSVHNVYGA AQHGRHQHAH HHMHGHAAYS AGAAAHSLML 900 SRMESGEVGA VQALSGMQTA PLPARLEVAP LSLNHPQAML RSELTAVTSA LPEAERQYYD 960 HDSGYVRRGM THHHHHVADP WQQHIHEAFD GITEPGLLPA SARRPRTKRT SASGDNVAGG 1020 ALSGSGGVDK YDSNVDDNDG ELIHAATAAV AGDGSDADQR LTTHPMSQSA HMQQGDDGSS 1080 ELHHADTTHA VAVGPHNGSS SYGMTGQQLQ SQQHGGAVQT LQYEYAQPQQ EDDAAAAAAA 1140 EEEEVFGQPA QADTLGQPGV TEEAARGFGG AAGAWSHHEP AAAAGAAELY DAAPATELQQ 1200 EGSIRTTGRV NTVNSQ*

Sequence ? help Back to Top

Protein Sequence Length: 1217 aa Download sequence

MAEEDPELTH RLDVSDAERE RLKRQYRGVF WDKKTRRWRC QLGYQSKKIF LGYFDDASDA  60
ARAYDTKLVE LRGAAARTNF PITDYLELLQ SLPSQRAAPR PAAQSQLQQQ HLDDDDPHGS  120
VKQHAAAVRR TSNPGAGQDV GRGGGRGASS YLPGTITSVP LLPPNAYPRN HWGSQEEAEM  180
YSAARGELTA AGEDQGGQGG EYPDVAEQRA AGQQYVDEQD EDDPHTVDPE RAWVDAQRAA  240
RMHGHSAAAS AALLDVAPGG DYDVSRHLLE EQQPSSDRRS RSKRRTASYA ELDDVAAEEE  300
RPHSYRGVFW DKKSRRWRCQ LGHKNKKIFL GYFSDPQEAA HAYDVKLVEL HGRTAKTNFP  360
VTEYIADDGS LGPAATARGA DVAPRHADDR DTARRNGYNS SNSAGLAARR GLSDTDFGRV  420
AKGLPKLPSD VLDRDWGADA QPWDTRHMDQ RQMQHMTDDT MTKRRRVDQS PPPILDYHAG  480
AGVTAAAAAD GGGGAAGGAH GLITRRPTST SGGGGNGGNW QSPFSEQGAE DTSGGAGSGS  540
LSNLGRTRSV GEEVLEPMHR LGSGHRVVET PSVMPVLPSR GNTAVATGTV RLPPLAPGGG  600
SISPVGTAAG SMHGGYAGLN VGDARGSIGH LNRLPSSEVR AVQALSSLSE HGHHHPHTGH  660
VHHGHMQHVH HHGMHTAHQG SSYGMHNTGM SVFGGPGRLE HTRVPPAHAA HYDYGMLQHY  720
SGMDRGRGDG GWGHTTAAGH THSSTSPLGV TQGLSLSRFG SSEVGAAQAL SGLIASGSDG  780
TYHPYHGHSS PSPTMMTRGH GAHSPIMAAG GTAAGRGAHM HVHHAMRGDV GGGLSGMQDN  840
EDSLTHTHWP QHHGIHGVGH AGSVHNVYGA AQHGRHQHAH HHMHGHAAYS AGAAAHSLML  900
SRMESGEVGA VQALSGMQTA PLPARLEVAP LSLNHPQAML RSELTAVTSA LPEAERQYYD  960
HDSGYVRRGM THHHHHVADP WQQHIHEAFD GITEPGLLPA SARRPRTKRT SASGDNVAGG  1020
ALSGSGGVDK YDSNVDDNDG ELIHAATAAV AGDGSDADQR LTTHPMSQSA HMQQGDDGSS  1080
ELHHADTTHA VAVGPHNGSS SYGMTGQQLQ SQQHGGAVQT LQYEYAQPQQ EDDAAAAAAA  1140
EEEEVFGQPA QADTLGQPGV TEEAARGFGG AAGAWSHHEP AAAAGAAELY DAAPATELQQ  1200
EGSIRTTGRV NTVNSQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	284	RSRSKR
2	463	467	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	4e-09	AP2 family protein