PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cz10g12080.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 23079.9 Da PI: 8.6697 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.1e-12 | 40 | 63 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC ++++ G C++GdrC+FaHg Cz10g12080.t1 40 KTKLCTRWLA-GDCRFGDRCNFAHG 63 8*********.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence |
MDGAFPSQKG QSFEGSPGRG GGYGNGARPR GFRGTAENAK TKLCTRWLAG DCRFGDRCNF 60 AHGDEELRKL PPREDEFGPP GRGGYGGGPG RGYAPRGGYG GRGMGGGYGG RGRGYDDYYQ 120 GGAGGGGGYG GGYGGGGGND YAPPGPQGYG PPMGGPGPRE SQYGRPPPGM SEDAWAQQGY 180 PVHGPNGWVM YRAKDTGEAY YHNYNSNATQ WEKPADWPPN M* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 100 | 107 | GGRGMGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-09 | C3H family protein |