PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz05g04080.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

GATA

Protein Properties

Length: 836aa MW: 86253.4 Da PI: 7.0266

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz05g04080.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	38.3	1.8e-12	81	113	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C+nC + +p+WRrg ++ LCnaCG++ r++ Cz05g04080.t1 81 CRNCSAEVSPQWRRGTPDKPVLCNACGIRLRRH 113 *************955555********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MTMSANPVVL QHPAPSPMPA QAPKCHQHKQ KQPKRQQGGG STPTSGQPKA TTTTSSADAT 60 DVAKRAPRLR PSNGNHLAGP CRNCSAEVSP QWRRGTPDKP VLCNACGIRL RRHKCLEDAI 120 STGHCKGRSM QGIMQAAAIT NNLQNLAGIT HPMLLWMMPQ VPQTANPAAQ VTSTGTGTGA 180 NSSSSTKSQP VQSGSVMIPT SAVGAPTSHS LPPAGAAGSV SPSVGVAAPS TVKVEANSQP 240 ASTSAIMHDT AKSIMACSAR SNESSRSDLA ATSQQQVSTD TPGISQKPIN MLPFGLLPSQ 300 FMWPLTGQLT GSTPPLPLPN LGQVIGFPVG STAANSLMAA AELSRRGGLV IGSPAGCMTS 360 AVSHSSNPLL PVTVQGVNSQ SVQGSTGTGF APFSALSITS QLPHQLALQG QHPSLVASTF 420 ANMGMPSIPV PLIPAAGLPF GMAPNYIPLS SVSTAAAAPI GCPIPAVGMS EAVPSMPVVT 480 DLARTGSSQV PAPSNNTNGA AANTSAAASQ QPAEHNGLLR QNSRVSVIGN ASTSTLDPVV 540 LSSTDAQPGA QNSSRKAAVS VGKLPSKRRQ LKRSSSSSGH ASSSSPKRQK VDRRHGSRKR 600 KVLRASVPES TARCAALDDC TDNEHSQDLS EALWQPNHLE AGDMSSDAAL LDLELETSDT 660 MHTDMGSNGG SDSTFDMPYS SDDGRNTSDS SNLGVGGLHP DQQETTTAAH KLLADGNLSF 720 GITSTTAGIL CSSDPLVALD HDQEAYDEPN CDFSEMSMPN ALDLPLNVHD PTSESWGNSA 780 LSSLGTFDQL SSGFDQDSQL STLNAQQLKD DYQPALCMHA QCLKELLHMN AVVTD*

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MTMSANPVVL QHPAPSPMPA QAPKCHQHKQ KQPKRQQGGG STPTSGQPKA TTTTSSADAT  60
DVAKRAPRLR PSNGNHLAGP CRNCSAEVSP QWRRGTPDKP VLCNACGIRL RRHKCLEDAI  120
STGHCKGRSM QGIMQAAAIT NNLQNLAGIT HPMLLWMMPQ VPQTANPAAQ VTSTGTGTGA  180
NSSSSTKSQP VQSGSVMIPT SAVGAPTSHS LPPAGAAGSV SPSVGVAAPS TVKVEANSQP  240
ASTSAIMHDT AKSIMACSAR SNESSRSDLA ATSQQQVSTD TPGISQKPIN MLPFGLLPSQ  300
FMWPLTGQLT GSTPPLPLPN LGQVIGFPVG STAANSLMAA AELSRRGGLV IGSPAGCMTS  360
AVSHSSNPLL PVTVQGVNSQ SVQGSTGTGF APFSALSITS QLPHQLALQG QHPSLVASTF  420
ANMGMPSIPV PLIPAAGLPF GMAPNYIPLS SVSTAAAAPI GCPIPAVGMS EAVPSMPVVT  480
DLARTGSSQV PAPSNNTNGA AANTSAAASQ QPAEHNGLLR QNSRVSVIGN ASTSTLDPVV  540
LSSTDAQPGA QNSSRKAAVS VGKLPSKRRQ LKRSSSSSGH ASSSSPKRQK VDRRHGSRKR  600
KVLRASVPES TARCAALDDC TDNEHSQDLS EALWQPNHLE AGDMSSDAAL LDLELETSDT  660
MHTDMGSNGG SDSTFDMPYS SDDGRNTSDS SNLGVGGLHP DQQETTTAAH KLLADGNLSF  720
GITSTTAGIL CSSDPLVALD HDQEAYDEPN CDFSEMSMPN ALDLPLNVHD PTSESWGNSA  780
LSSLGTFDQL SSGFDQDSQL STLNAQQLKD DYQPALCMHA QCLKELLHMN AVVTD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47140.1	3e-08	GATA family protein