PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cz04g06060.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
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Family | CO-like | ||||||||
Protein Properties | Length: 373aa MW: 40665.2 Da PI: 6.4973 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.7 | 1.8e-06 | 2 | 44 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C ++ + +C+++q +lC+ C +++H++ H +v+ Cz04g06060.t1 2 ATCVVCQAA-AFVYCHNDQAFLCAGCDSSIHSSnalaarHCRVK 44 5899**988.*********************7788888888776 PP | |||||||
2 | zf-B_box | 29 | 2.2e-09 | 43 | 87 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++++k+ + fC+++q +lC+ C +H + H++vp Cz04g06060.t1 43 VKVCELCHKKQSTVFCKNDQAFLCDYCDADIHLNnplgarHELVP 87 579*****************************7779999999998 PP | |||||||
3 | CCT | 67.1 | 4.8e-23 | 302 | 346 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+++++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++e Cz04g06060.t1 302 RAERVMRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKREE 346 99****************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence |
MATCVVCQAA AFVYCHNDQA FLCAGCDSSI HSSNALAARH CRVKVCELCH KKQSTVFCKN 60 DQAFLCDYCD ADIHLNNPLG ARHELVPAIQ AVQEMGCCGI SVEAKGENLT SALCESVCHS 120 ETSHSVSATP SLTGSARPTE TAQMAPLSNV VPPAVDLPQN KVLDKDTLAK SIWGKDFEAF 180 ELDSSWLDRL DMGFDFTDIL TDAPADGLVP TLSGNSSEHA DLLVVPSMSD DFQVPSLPNH 240 QDPVVTLDKL TPMMPTPAVN PQTYPQQTAV VLTARPADSA ATYSMSEASY MSNHSNSDNL 300 TRAERVMRYR EKRKNRKFEK TIRYASRKAY AEVRPRIKGR FAKREEVLAF KAAEAAMKMG 360 RGGHNDMVVP VM* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15840.1 | 2e-44 | CO-like family protein |