PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cz02g13260.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
Family LSD
Protein Properties Length: 186aa    MW: 19395.9 Da    PI: 7.8337
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cz02g13260.t1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD134.53.3e-112045125
        zf-LSD1  1 CggCrtlLsYPr.GApsVRCalCdtV 25
                   CggC+tlL+YP  GA++VRC+ C ++
  Cz02g13260.t1 20 CGGCQTLLMYPQqGASNVRCSRCGHI 45
                   ***********55**********997 PP

2zf-LSD1451.7e-146385123
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                   C+gCr+lLsYPrGA sV+C+lC+
  Cz02g13260.t1 63 CNGCRVLLSYPRGAQSVQCSLCH 85
                   **********************9 PP

3zf-LSD143.84.1e-1498122125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    CggC ++L+YP+GA sV+C++C++V
  Cz02g13260.t1  98 CGGCSIMLMYPLGAQSVKCSVCHFV 122
                    ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MYGYMQPSAI SPGPHSHLVC GGCQTLLMYP QQGASNVRCS RCGHITAAPS PAAQGTDTSQ  60
IVCNGCRVLL SYPRGAQSVQ CSLCHNITQV PVYGHVVCGG CSIMLMYPLG AQSVKCSVCH  120
FVTNVSQNVP WQSGGSSQSQ GQGQQSSRPS PKPATQTVVV ENPPTLDDQG NEVPNIAVGV  180
VKDNH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.23e-33LSD family protein