PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cz02g08120.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
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Family | Whirly | ||||||||
Protein Properties | Length: 237aa MW: 25838.6 Da PI: 8.6572 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 96.8 | 2.2e-30 | 77 | 211 | 2 | 133 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv. 96 vyk+k+a+++ka++pt+e l g ++r+G +lle+a at+er+y W++k + als+te+ +++ ++ es +f+hdp + g++eGk+ k+l+ Cz02g08120.t1 77 VYKSKSAMTLKAIKPTWEGLSNGGWAVSREGKMLLEFASATGERTYGWDNKINVALSSTELCTILA-SPDESHDFYHDPDKMGADEGKMTKSLRWs 171 9************************************************************99874.7899**********************972 PP Whirly 97 ePlpdGs.Glfvnlsvtnslvkgnesf..svPvskaefav 133 + G G+++ l vt++ g ++ v ++ +ef Cz02g08120.t1 172 KATGTGRaGYYIALYVTEKTPMGPQKKecGVSLTPGEFYQ 211 55667778*********99877655432267777777755 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MLHMRCMSLS SKVAAAKRPL GLLVKQQLHG RPTRQICSAQ AVYSPQAAPP ATTDNYYAGG 60 SDADKAQGSA VFVDWTVYKS KSAMTLKAIK PTWEGLSNGG WAVSREGKML LEFASATGER 120 TYGWDNKINV ALSSTELCTI LASPDESHDF YHDPDKMGAD EGKMTKSLRW SKATGTGRAG 180 YYIALYVTEK TPMGPQKKEC GVSLTPGEFY QFKVLVEYCI PRLLGFDYLL DQPVGV* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-22 | Whirly family protein |