PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz01g17080.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

AP2

Protein Properties

Length: 882aa MW: 95663.7 Da PI: 6.2492

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz01g17080.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.7	1.7e-14	641	692	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++grW+A+I++ + + ++++lg ++ ++ Aa+a++ a++k +g Cz01g17080.t1 641 SRYRGVTKHRRSGRWEAHIWV----KdIGRQVYLGGYDDEDAAAEAYDVAALKCKG 692 79*****************....4445******99********99876 PP
2	AP2	38.6	2.7e-12	735	784	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++ +grW+++I +p g +k+++lg + + +Aaka++ a +l+g Cz01g17080.t1 735 SSYRGVTAHP-SGRWESRIGVP---G-SKHVYLGLYEDERKAAKAYDMALVRLRG 784 67******.7*****8...3.6******99***********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MIKHHSYHAT SLQPNYGGYA DIATQQTHMT PTASYRFGTS LSGVQPYHDR WCKDANCFEH 60 GTTRSSHAAG AHVPAATGSH RQGITITTGS SLVSNQEQRC QHGKKEPQER DITTVVCSDK 120 QAYAVPSCDP QGYGLPHRSP LVQHRHERSS GSNSSQLTGQ WLSTDAHPRH IAKTCLHPKS 180 HESGIRYDCC ISDLPPEVLA QAALYATQQR RAAAQAECTS LVACSRAQEH IHVPNTDRFL 240 QTSTTLDHQL STSAQARDAA HHGDHVLPDG EEDHLMELFC QYMTKQDKEA DNVLCNEAVT 300 AAPHVIVNHN REQTTAAGMQ CRMTDLCGGT DHHTYDVGGV ADVGGVSAGT GDDDDDDMAV 360 WELTPGCCHL ALVDEHVPTS SHTWQQAKYA HYSPVDDLDV DDDILITRSG SGGSMQAETL 420 TWVLPSTVLV PPDEVERKDS VMEQVSSRQD TQCILQEQPS VCMDVPGTKY SFDRDQHMDC 480 CDASGGTAGT EDSTAVMPAV LGSSGSHSPG SMHHTRLNKP KGRRMHGTSL AVKGRSKRGP 540 KLTSKVKSNR CTKPPAPLTA AESASGALQA LLPALKPTVS CVGLRQTGPR RSSRPKKIKM 600 NTGSGVLGAS DDDYDEVDDG DVGNDDDGGN DNNDDCTGRS SRYRGVTKHR RSGRWEAHIW 660 VKDIGRQVYL GGYDDEDAAA EAYDVAALKC KGSNVKTNFD LRRYADFLIC MDSITLEELI 720 MAVRRQSQGF SRGSSSYRGV TAHPSGRWES RIGVPGSKHV YLGLYEDERK AAKAYDMALV 780 RLRGANAATN YSLSEYKHQL AEYHQIQQAV SDGDDVVRAM MTVQSGPDFE QWIKQGCAAF 840 GIEVGRSAID QAAKETDATV ASGCETADST DLQSSEPIIE A*

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MIKHHSYHAT SLQPNYGGYA DIATQQTHMT PTASYRFGTS LSGVQPYHDR WCKDANCFEH  60
GTTRSSHAAG AHVPAATGSH RQGITITTGS SLVSNQEQRC QHGKKEPQER DITTVVCSDK  120
QAYAVPSCDP QGYGLPHRSP LVQHRHERSS GSNSSQLTGQ WLSTDAHPRH IAKTCLHPKS  180
HESGIRYDCC ISDLPPEVLA QAALYATQQR RAAAQAECTS LVACSRAQEH IHVPNTDRFL  240
QTSTTLDHQL STSAQARDAA HHGDHVLPDG EEDHLMELFC QYMTKQDKEA DNVLCNEAVT  300
AAPHVIVNHN REQTTAAGMQ CRMTDLCGGT DHHTYDVGGV ADVGGVSAGT GDDDDDDMAV  360
WELTPGCCHL ALVDEHVPTS SHTWQQAKYA HYSPVDDLDV DDDILITRSG SGGSMQAETL  420
TWVLPSTVLV PPDEVERKDS VMEQVSSRQD TQCILQEQPS VCMDVPGTKY SFDRDQHMDC  480
CDASGGTAGT EDSTAVMPAV LGSSGSHSPG SMHHTRLNKP KGRRMHGTSL AVKGRSKRGP  540
KLTSKVKSNR CTKPPAPLTA AESASGALQA LLPALKPTVS CVGLRQTGPR RSSRPKKIKM  600
NTGSGVLGAS DDDYDEVDDG DVGNDDDGGN DNNDDCTGRS SRYRGVTKHR RSGRWEAHIW  660
VKDIGRQVYL GGYDDEDAAA EAYDVAALKC KGSNVKTNFD LRRYADFLIC MDSITLEELI  720
MAVRRQSQGF SRGSSSYRGV TAHPSGRWES RIGVPGSKHV YLGLYEDERK AAKAYDMALV  780
RLRGANAATN YSLSEYKHQL AEYHQIQQAV SDGDDVVRAM MTVQSGPDFE QWIKQGCAAF  840
GIEVGRSAID QAAKETDATV ASGCETADST DLQSSEPIIE A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	9e-31	AP2 family protein