PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY68181.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 700aa MW: 77477.9 Da PI: 7.1106

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY68181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	119	220	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ l GAY68181.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDL 213 89**************************996555555..89*******************************************..4488999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ GAY68181.1 214 CVGIRRA 220 **997 PP
2	Auxin_resp	112.1	5.5e-37	289	372	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+ GAY68181.1 289 AATLAANRQPFEVVYHPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVSDPLYWPDSPWRLLQ 372 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVKSRV FYFPQGHAEH ACGPVDFRSC 60 RRIPPYILCR VSLIKFMADP ETDEVYAKIK LVPVSNNDPD FDNDDGIHSN ETQDKPASFA 120 KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGETWK FRHIYRGTPR 180 RHLLTTGWST FVNHKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGPEV TSGWNGNCVT 240 PYGGFSAFLR EDDNKLMRNG IGNVNGPSSN NGNNLMAKGK VRPESVIEAA TLAANRQPFE 300 VVYHPRASTP EFCVKASMVK AALQIRWCSG MRFKMAFETE DSSRISWFMG TISSVQVSDP 360 LYWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKSRLPQPPD 420 FPLDGQLPMP SFSGSLLGPN SPFGCLPDNT PAGMQGARHA HYGLSLSDLH LNKLQSGLSP 480 AGFPPFDRAA KPTRASNSPI LQKPSMSENI SCLLTMSHST QPSKKADDLK TPQLVLFGKP 540 ILTEQQMSHS CSGDTVSPVR TGNSSSEGNL DKLTNFSDGS GSALQQQGLP DRSFYEVFQW 600 YKDNRLETEP SLETGHCKVF MESEDVGRTL DLSLLGSYDE LYKKLAEMFG IENAETLSHL 660 LYRDVTGAVK HIGDEPFSDF MKTARRLTIL MDSGSDNVGV

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVKSRV FYFPQGHAEH ACGPVDFRSC  60
RRIPPYILCR VSLIKFMADP ETDEVYAKIK LVPVSNNDPD FDNDDGIHSN ETQDKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGETWK FRHIYRGTPR  180
RHLLTTGWST FVNHKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGGPEV TSGWNGNCVT  240
PYGGFSAFLR EDDNKLMRNG IGNVNGPSSN NGNNLMAKGK VRPESVIEAA TLAANRQPFE  300
VVYHPRASTP EFCVKASMVK AALQIRWCSG MRFKMAFETE DSSRISWFMG TISSVQVSDP  360
LYWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKSRLPQPPD  420
FPLDGQLPMP SFSGSLLGPN SPFGCLPDNT PAGMQGARHA HYGLSLSDLH LNKLQSGLSP  480
AGFPPFDRAA KPTRASNSPI LQKPSMSENI SCLLTMSHST QPSKKADDLK TPQLVLFGKP  540
ILTEQQMSHS CSGDTVSPVR TGNSSSEGNL DKLTNFSDGS GSALQQQGLP DRSFYEVFQW  600
YKDNRLETEP SLETGHCKVF MESEDVGRTL DLSLLGSYDE LYKKLAEMFG IENAETLSHL  660
LYRDVTGAVK HIGDEPFSDF MKTARRLTIL MDSGSDNVGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein