PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY66764.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 584aa MW: 64367.2 Da PI: 5.5146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY66764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	9.7e-07	375	399	7	30
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 ++ErrRR+++N+++ Lr+++Pk + GAY66764.1 375 MAERRRRKKLNDRLYMLRSVVPKiS 399 79********************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MLSRLNGVVW MDGKEEEGSA AWARNNINNN SSNSINNNCN TNNMSCSNNN DNNNGVIENE 60 EEMGSLPGFK SMLEVEDDWY VTGNTSLNNH QDITFPPNLG DPTTDNLLLN AVDSSSSCSP 120 SSSVFNNFDA SQVHYFLPQK NSFSSFMNVV SNNNSLEHGF DLGEMGFLDT QATHALNRGN 180 GGILNGFNDL SANNQMNATN LCSDPQFGTN RTLQFPENGS SSFAGFRGFD ENNGNSLFLN 240 RSKLLRPLET FPSTGAQPTL FQKRAALRKN LGGNEASLGV LGTQNSQLLC GIESDKGKKE 300 LTEDNEKKRK LSISDDLEDV SVDGSGLNYD SDDFLENNKV EEMGKNGGSS SNAISTITGG 360 DQKGKKKGLP AKNLMAERRR RKKLNDRLYM LRSVVPKISK VEVRVREGRA VNIHMFCSRR 420 PGLLLSTMRA LDNLGLDIQQ AVISCFNGFA MDVFRAELEG EKSKDTTDGA ADSVNDTSHF 480 NSYKNWHVAL LEGEKSKDTT DGAADSVNDT SHFNSYKNWH IAGQHDFCNS EKKNSTAEIT 540 HLPQLIQLKR QSCSLSFNCL TITSYMKIYL YIATQHKLID STIL

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MLSRLNGVVW MDGKEEEGSA AWARNNINNN SSNSINNNCN TNNMSCSNNN DNNNGVIENE  60
EEMGSLPGFK SMLEVEDDWY VTGNTSLNNH QDITFPPNLG DPTTDNLLLN AVDSSSSCSP  120
SSSVFNNFDA SQVHYFLPQK NSFSSFMNVV SNNNSLEHGF DLGEMGFLDT QATHALNRGN  180
GGILNGFNDL SANNQMNATN LCSDPQFGTN RTLQFPENGS SSFAGFRGFD ENNGNSLFLN  240
RSKLLRPLET FPSTGAQPTL FQKRAALRKN LGGNEASLGV LGTQNSQLLC GIESDKGKKE  300
LTEDNEKKRK LSISDDLEDV SVDGSGLNYD SDDFLENNKV EEMGKNGGSS SNAISTITGG  360
DQKGKKKGLP AKNLMAERRR RKKLNDRLYM LRSVVPKISK VEVRVREGRA VNIHMFCSRR  420
PGLLLSTMRA LDNLGLDIQQ AVISCFNGFA MDVFRAELEG EKSKDTTDGA ADSVNDTSHF  480
NSYKNWHVAL LEGEKSKDTT DGAADSVNDT SHFNSYKNWH IAGQHDFCNS EKKNSTAEIT  540
HLPQLIQLKR QSCSLSFNCL TITSYMKIYL YIATQHKLID STIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	383	KKKGLPAKNLMAERRRRKK
2	377	384	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	8e-39	bHLH family protein