PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY66545.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 409aa    MW: 46361.1 Da    PI: 9.2107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY66545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07730126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt++C  +++ G C++ ++C+FaHg
  GAY66545.1  7 YKTRICVLYQK-GRCSR-PTCSFAHG 30
                9**********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MFERKFYKTR ICVLYQKGRC SRPTCSFAHG DAELRRPFRS HHGGPDYRVG DLRDKLDRRL  60
SPQKIYSPGR DTRGRNRFRG LSPSRSPENK SDRKRWKKQH LDGPREFSAS LKISDGINDR  120
VKERKFTPSD SKVVLLEQLK EVQLDINVLE DRKLQLETNE EEKGQEADIL SSRIKELETQ  180
LQKEKEESKR SQARLQKLGY HLGLDATKVG GNEEDSSINI MSDEETTNYH LVDPQNDKQT  240
IPSPNKKKLH VDRDTTNGFV PEANLTKDGG RVAESVHLKE VSWWNQHPTN HGSVADESKL  300
KGKNVSTSWF SAQAKNVRSA NALALPSTGI AAHVNDEEIE VEVEQIEEID MASAGTGKGA  360
TYMAKGLQFR LPPPLPIPRN AYIEVSLLGI AYWIYSICPH LCVHNSKSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-35C3H family protein