PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY65618.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

DBB

Protein Properties

Length: 686aa MW: 74997.4 Da PI: 6.7427

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY65618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1.1e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ GAY65618.1 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	25.2	3.4e-08	53	86	2	35
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 + + C+ ++ek + +fC +++ l+C+dC + +H+ GAY65618.1 53 KLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHS 86 6789***************************994 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC 60 QEKAAFIFCV EDRALFCKDC DEPIHSPGSL SANHQRFLAT GIRVALSSSC SKDAERNISE 120 PPNQQASQTS VKMPTQQSSS ISSPWAVDDF LQFSDFESSG KKEQLEFGEL EWIADMGIFN 180 DQLPQEALAA AEVPQLPKPR IEIPDDDDEH FTVPDLGVSS IPTLSKAMDV QCFVLFGIER 240 CVTHAYSCII HTTWSNKTTM PTVSAAVQRQ GRIGHSDKSR SSLRMISEAS WISNGALVPT 300 IVHSATLATD TQVLRLLKRS IDPNTIPRSS FLDSWDFKLD PCESSGGQFL GILCSIPSDN 360 STSRITAIYL DSSGYDGFLT PSIGNLTELT TLDLSRNNFR GPIPDTVTDL RKLTTLYLPG 420 NFFTGNIPVG ITRLKKLQTL DLSHNSLSGI IPAQLSGLRS LTALRLSHNA FSGKIPSLTG 480 AWQLHTLDLD SNQLYGNLPK FPTSLRTLSL SHNLLSGHLS SLRNLVNLKS LDLSSNRFTG 540 AISHEVLTLP QVVSIDVSVN RLTAIEMTTL SGDTHLQELD VQGNLLRGHL PINLVSLRNL 600 TSINLARNQL SGHIPKVYGA KLGSSWRSLF LDHNFLWGNL PPEFSSSITR IRGSLAKNCL 660 SCPETIRLCH GGQRPASECV GQNDKE

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC  60
QEKAAFIFCV EDRALFCKDC DEPIHSPGSL SANHQRFLAT GIRVALSSSC SKDAERNISE  120
PPNQQASQTS VKMPTQQSSS ISSPWAVDDF LQFSDFESSG KKEQLEFGEL EWIADMGIFN  180
DQLPQEALAA AEVPQLPKPR IEIPDDDDEH FTVPDLGVSS IPTLSKAMDV QCFVLFGIER  240
CVTHAYSCII HTTWSNKTTM PTVSAAVQRQ GRIGHSDKSR SSLRMISEAS WISNGALVPT  300
IVHSATLATD TQVLRLLKRS IDPNTIPRSS FLDSWDFKLD PCESSGGQFL GILCSIPSDN  360
STSRITAIYL DSSGYDGFLT PSIGNLTELT TLDLSRNNFR GPIPDTVTDL RKLTTLYLPG  420
NFFTGNIPVG ITRLKKLQTL DLSHNSLSGI IPAQLSGLRS LTALRLSHNA FSGKIPSLTG  480
AWQLHTLDLD SNQLYGNLPK FPTSLRTLSL SHNLLSGHLS SLRNLVNLKS LDLSSNRFTG  540
AISHEVLTLP QVVSIDVSVN RLTAIEMTTL SGDTHLQELD VQGNLLRGHL PINLVSLRNL  600
TSINLARNQL SGHIPKVYGA KLGSSWRSLF LDHNFLWGNL PPEFSSSITR IRGSLAKNCL  660
SCPETIRLCH GGQRPASECV GQNDKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	1e-93	DBB family protein