PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY65530.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 405aa MW: 44348.7 Da PI: 7.1319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY65530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6e-09	292	339	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq GAY65530.1 292 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 339 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MEKEDLLMNE GVNSTPPTWS SCNFSSEKVI TNCCLNPNWD YSMDQSDPFE AALSSIVSSP 60 AASNAPTTCS VIIPAGGGGD NVMIRELIGR LGSICNSGEV LPQSYIQAQN NNNSNTCCYS 120 TPLNSPPLPK LNLSMIRGSK SSNNLPIPAA DPGFAERAAR LSCFAGSQMN MNSSVSASDS 180 KKLRVSRSST PESNNNADSK EGSSLSEQIT SQTVTDSNPR KRKSIQRPKA KETPPTNDPK 240 VVAENPEDSN SMRSKQDENK SDSSKTKDNS KPVEPPKDYI HVRARRGQAT DSHSLAERVR 300 REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDLNM 360 EALLSKDVPS LWDDDLQSLV QMGFNQNQPR SLNGSMATTQ MKIEM

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MEKEDLLMNE GVNSTPPTWS SCNFSSEKVI TNCCLNPNWD YSMDQSDPFE AALSSIVSSP  60
AASNAPTTCS VIIPAGGGGD NVMIRELIGR LGSICNSGEV LPQSYIQAQN NNNSNTCCYS  120
TPLNSPPLPK LNLSMIRGSK SSNNLPIPAA DPGFAERAAR LSCFAGSQMN MNSSVSASDS  180
KKLRVSRSST PESNNNADSK EGSSLSEQIT SQTVTDSNPR KRKSIQRPKA KETPPTNDPK  240
VVAENPEDSN SMRSKQDENK SDSSKTKDNS KPVEPPKDYI HVRARRGQAT DSHSLAERVR  300
REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDLNM  360
EALLSKDVPS LWDDDLQSLV QMGFNQNQPR SLNGSMATTQ MKIEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-77	bHLH family protein