PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY65405.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 459aa MW: 50239.5 Da PI: 6.1683

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY65405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.7	6.3e-25	174	230	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+ei+++g H h+ GAY65405.1 174 SDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHD 230 8******************************98.*******************7 PP
2	WRKY	33	1.2e-10	347	366	3	22
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 Dgy+WrKYGqK+vkg+++pr GAY65405.1 347 DGYRWRKYGQKMVKGNPNPR 366 9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MAESESFEAR KRHENPQNDE FEEEEEEEDE EILDDEEEDE GARQLTEPHQ LQLTENNKHY 60 KGLQVNSGVE SNEGTKLKEQ VEVSQHEGSG SIAVQAAESQ TQYQLQPSIC PTSLSELSPT 120 SVTEPISSAP SPTLTGQNLS LVKVDTASVP EANLQNSSEL KNVSVVHIVK TPVSDGYNWR 180 KYGQKQVKSP KGSRSYYKCT YSDCCAKKIE CSDHSGHVIE IVNKGMHSHD PPRKNNCVRE 240 SRLISSVGPV IGNNITEQSL RMLNDSVPST SSKDSVRDSN LVPERKRPNL SSFAGDGEVS 300 VKEEHPSEPE PKRRQKDNLA NSSPLLKPGK KPKFVVHAAG DVGISGDGYR WRKYGQKMVK 360 GNPNPRYGGA RTVIVCGPTX VHDHDMPVPK KRHGPPSAPL VAAAAPASMN NLQLKKTDAV 420 QNQTTSTQWS VRTEGELAGA AMDLGGEKAM ESARTLLSI

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MAESESFEAR KRHENPQNDE FEEEEEEEDE EILDDEEEDE GARQLTEPHQ LQLTENNKHY  60
KGLQVNSGVE SNEGTKLKEQ VEVSQHEGSG SIAVQAAESQ TQYQLQPSIC PTSLSELSPT  120
SVTEPISSAP SPTLTGQNLS LVKVDTASVP EANLQNSSEL KNVSVVHIVK TPVSDGYNWR  180
KYGQKQVKSP KGSRSYYKCT YSDCCAKKIE CSDHSGHVIE IVNKGMHSHD PPRKNNCVRE  240
SRLISSVGPV IGNNITEQSL RMLNDSVPST SSKDSVRDSN LVPERKRPNL SSFAGDGEVS  300
VKEEHPSEPE PKRRQKDNLA NSSPLLKPGK KPKFVVHAAG DVGISGDGYR WRKYGQKMVK  360
GNPNPRYGGA RTVIVCGPTX VHDHDMPVPK KRHGPPSAPL VAAAAPASMN NLQLKKTDAV  420
QNQTTSTQWS VRTEGELAGA AMDLGGEKAM ESARTLLSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	3e-94	WRKY family protein