PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64993.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 534aa MW: 57772.3 Da PI: 7.7256

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.4	1.6e-17	86	202	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............................rergferspkqCkekwenlnkrykkikege 68 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ + + +s +qCk+k++nl+kryk + +++ GAY64993.1 86 EWSDTAIACLLEAYTEKLNQLNRGNLRGRDWEEVAEVVsercgggggnnnnnendnninnnnnssgekrEVVKAAKSVEQCKNKIDNLKKRYKVEVQRM 184 5***************************************************************9755567789********************* PP trihelix 69 kkrtsessstcpyfdqlea 87 ++ s +s++ +f+q+ea GAY64993.1 185 GSSGS-GTSNWLWFKQIEA 202 9755.556******985 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MSSQDYPLIP ESHAPTRIPQ TTDSTAAANY YAHSAFTTNE DSDADKSGSG SGSGSGPKRN 60 PYYYKKQKTG ETATDYRVDY RKDREEWSDT AIACLLEAYT EKLNQLNRGN LRGRDWEEVA 120 EVVSERCGGG GGNNNNNEND NNINNNNNSS GEKREVVKAA KSVEQCKNKI DNLKKRYKVE 180 VQRMGSSGSG TSNWLWFKQI EAIMGTINNN HNNAISSSNY GLVNKSTGGG GSTEIVERNG 240 GAAATAMASA SPSPVAVSPF SRQARRYTPS TSTVTYNLKS KPQQNLKWQR VVFKISGSAL 300 VGNCHNIDPK VVMQIAREVA SACRLGVEVA IVLGGRNFFC GDSWLSDTGF DRPTAYQIGM 360 MATVMNSILL QSALEKLEIK TRVQSAFALP EVDEPYSRQR AIRHLEKGRV VIFGGIGAGT 420 GNPVFTTDAA AALRASELNA DAMVKGVSVN GIYDSHSGNG HVVPEHISYR EAVSGNFTSM 480 DTMAITYCEE NGIPVFNLLE PGNISSALCG GQVGTLIGEG YFKCIMWRPS GHVD

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MSSQDYPLIP ESHAPTRIPQ TTDSTAAANY YAHSAFTTNE DSDADKSGSG SGSGSGPKRN  60
PYYYKKQKTG ETATDYRVDY RKDREEWSDT AIACLLEAYT EKLNQLNRGN LRGRDWEEVA  120
EVVSERCGGG GGNNNNNEND NNINNNNNSS GEKREVVKAA KSVEQCKNKI DNLKKRYKVE  180
VQRMGSSGSG TSNWLWFKQI EAIMGTINNN HNNAISSSNY GLVNKSTGGG GSTEIVERNG  240
GAAATAMASA SPSPVAVSPF SRQARRYTPS TSTVTYNLKS KPQQNLKWQR VVFKISGSAL  300
VGNCHNIDPK VVMQIAREVA SACRLGVEVA IVLGGRNFFC GDSWLSDTGF DRPTAYQIGM  360
MATVMNSILL QSALEKLEIK TRVQSAFALP EVDEPYSRQR AIRHLEKGRV VIFGGIGAGT  420
GNPVFTTDAA AALRASELNA DAMVKGVSVN GIYDSHSGNG HVVPEHISYR EAVSGNFTSM  480
DTMAITYCEE NGIPVFNLLE PGNISSALCG GQVGTLIGEG YFKCIMWRPS GHVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-143	Trihelix family protein