PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64860.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 449aa    MW: 49866.7 Da    PI: 5.8014
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.43.7e-91444422373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 
                 ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r ++ ++++ + ++ s+t+   + + +++++l  ++++ P+++f++ + 
  GAY64860.1  44 EKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDPNQRLTSSFLRALISRASKVCPTTLSNFNGSSTN---HRRLMSVTELagYVDLIPWHRFGFCAS 139
                 689*********************************************************999999998...455555555566*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181
                 N+aIl+a++g ++vHi+Df+i++++QWp+L++aLa+RpegppslRiT+  s  ++    + ++ee+g rL +fA+  +vpfef+v+             
  GAY64860.1 140 NSAILKAIQGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPYSRPPVpplLNVSTEEVGLRLGNFAKFRDVPFEFKVIddsssagdivmsk 238
                 ************************************************9997777889999*************************9999999985444 PP

        GRAS 182 ..vakrledl.............eleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                                        +++ L+++++Eal++n++  l +l+d+++   +      rd++L+l+k+l+P +++vv++++d++++s+  r++ +
  GAY64860.1 239 leS------SssfhfesllshlsTPSILNLREDEALVINCQNWLRYLYDDEGRGINaqdasLRDAFLHLIKGLNPCIMIVVDEDSDLSASSLTSRIATC 331
                 330......32232222233344556669999****************9987654444455899*********************************** PP

        GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                 ++y +  fd+le+ lp+es++r  +E+  +g +i+n+++ eg++r+er e+ +k ++r+++aGF ++p+ e+++k++++ll +++  g+ ++ e++ l 
  GAY64860.1 332 FNYLWIPFDALETFLPKESRQRLDYEAD-VGHKIENIISFEGFQRIERSESGSKLSQRMKNAGFFSLPFCEETVKEVRSLLDEHA-SGWGMKREEEMLA 428
                 ****************************.********************************************************.889999999**** PP

        GRAS 360 lgWkdrpLvsvSaW 373
                 l+Wk+++ v+++aW
  GAY64860.1 429 LTWKGHNSVFATAW 442
                 ************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MKAELRANTS SISLQNPSLF NTGQSSIPGA LRGCLGSLDG ACIEKLLLHC ASALESNDVT  60
LAQQVMWVLN NVASPVGDPN QRLTSSFLRA LISRASKVCP TTLSNFNGSS TNHRRLMSVT  120
ELAGYVDLIP WHRFGFCASN SAILKAIQGY SKVHILDFSI THCMQWPTLI DALAKRPEGP  180
PSLRITVPYS RPPVPPLLNV STEEVGLRLG NFAKFRDVPF EFKVIDDSSS AGDIVMSKLE  240
SSSSFHFESL LSHLSTPSIL NLREDEALVI NCQNWLRYLY DDEGRGINAQ DASLRDAFLH  300
LIKGLNPCIM IVVDEDSDLS ASSLTSRIAT CFNYLWIPFD ALETFLPKES RQRLDYEADV  360
GHKIENIISF EGFQRIERSE SGSKLSQRMK NAGFFSLPFC EETVKEVRSL LDEHASGWGM  420
KREEEMLALT WKGHNSVFAT AWVPNGLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-126GRAS family protein