PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64595.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 558aa MW: 59594 Da PI: 6.5188

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	374	422	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq GAY64595.1 374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 422 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MDMSDKDKFV LEKRNDNPMD YHSPNMSSDW QFSGANLANA ALNLVPTGNP LGVGSSSCSS 60 APMVDSFNQT IWDHPTNSQS LGYCNIDAQH NASSSNALGI RKGSSASLRS CIDRPLDIGW 120 NPASSMIKGG IFLPNAPGMF PQSLSQFPAD SAFIERAARF SSFSGGNFCD MMNTFGTPEP 180 TGLYSRGRGM MQGPQEVFAG NGLKSLSRGQ SQKNEMNVAE VSKDASLSVE HGASNGSTLK 240 NERKGESLVN SHGEAKQGVG ASGGDSDEAE FSGGGGQDEP SAVEGTGGEP SAKGLSSKKR 300 KRNGQDIEFD QAKGGQSSGE AAKDNTENQR KGDHKPSSTG NKSAGKQGKQ GSQTSDPPKE 360 EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS 420 LQRQVEFLSM KLATVNPRLD FNIEELLAKD VLQSRAGPSS TLGFSPDMPL VYPPVHQSQA 480 GLMHGALPGM GNPSDILRRT INSQLTPMTG GFKEPSQVAN VWEDELHNVV QMSYGTSAPS 540 DSQDVNGSTP PGHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MDMSDKDKFV LEKRNDNPMD YHSPNMSSDW QFSGANLANA ALNLVPTGNP LGVGSSSCSS  60
APMVDSFNQT IWDHPTNSQS LGYCNIDAQH NASSSNALGI RKGSSASLRS CIDRPLDIGW  120
NPASSMIKGG IFLPNAPGMF PQSLSQFPAD SAFIERAARF SSFSGGNFCD MMNTFGTPEP  180
TGLYSRGRGM MQGPQEVFAG NGLKSLSRGQ SQKNEMNVAE VSKDASLSVE HGASNGSTLK  240
NERKGESLVN SHGEAKQGVG ASGGDSDEAE FSGGGGQDEP SAVEGTGGEP SAKGLSSKKR  300
KRNGQDIEFD QAKGGQSSGE AAKDNTENQR KGDHKPSSTG NKSAGKQGKQ GSQTSDPPKE  360
EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS  420
LQRQVEFLSM KLATVNPRLD FNIEELLAKD VLQSRAGPSS TLGFSPDMPL VYPPVHQSQA  480
GLMHGALPGM GNPSDILRRT INSQLTPMTG GFKEPSQVAN VWEDELHNVV QMSYGTSAPS  540
DSQDVNGSTP PGHMKVEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-151	bHLH family protein