PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64390.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 280aa MW: 31891.2 Da PI: 9.5577

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.9	8.3e-11	2	33	18	49
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49 +gi KKA EL +L++ e+av++fs++gk y++ GAY64390.1 2 AGIYKKATELVTLTGSEIAVVVFSQSGKPYTF 33 69*****************************9 PP
2	SRF-TF	45.8	7.8e-15	116	155	10	49
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +tfskRr gi K A+EL +L++ e+a+++fs++gk y++ GAY64390.1 116 IITFSKRRSGIYKNASELVTLTGSEIAIVVFSQSGKPYTF 155 68*************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MAGIYKKATE LVTLTGSEIA VVVFSQSGKP YTFGHPSVEA VANRFLGMNQ LPNDNIHSLV 60 VGHRQVSINE LNQQHNELRR QLDEEKEQEK MLTQMRRGKE TQPPKKTKGR QKIEMIITFS 120 KRRSGIYKNA SELVTLTGSE IAIVVFSQSG KPYTFGHPSV EAVANRFLGM NQLPNDNIHS 180 LVVGHRQVRI NELNQQHNEL RRQLDEEKEQ EKILTQMRRG KETQPRMWET PVDEHNLQEQ 240 LQMDSAVDDL HQIFLAKLNE RAAAAAASSP VAPSLYFHHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-29	M-type_MADS family protein