PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY64330.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 428aa MW: 48154.3 Da PI: 9.6018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY64330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64	3.5e-20	13	100	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt +e+laLi+a+ ++ +l+rg+l+ +W++vs+++ + g ++s++qC++k+e+l+kry+ +k+++ + + +s++ +f l+ GAY64330.1 13 CWTTDETLALINAYGARWLSLNRGNLRTSDWDAVSSAVseSTPGASKSSIQCRHKIEKLRKRYRSEKQRSLSFPGRFVSSWDLFPLLD 100 8***********************************5555699**********************9998888899999998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MPTPSTKRVP PPCWTTDETL ALINAYGARW LSLNRGNLRT SDWDAVSSAV SESTPGASKS 60 SIQCRHKIEK LRKRYRSEKQ RSLSFPGRFV SSWDLFPLLD SMNFGSSSAP GLGNQSRELV 120 DQKVVDVTEF RVKTRNDKSL MSKYGNIDVD FNPDFALRSG FMGNYENIDF GDDFGGLDSR 180 AKDYLKVNGD FGVGFGMKMG VDDTYFVTPQ GFRLKSYENI DDGKSCPRLD FNHGVDGFPV 240 RTFGDRISVP PPGFKAENFV SVEANFKPNA YYDDHADYVV AKGSGSEFYA KSLGDGDFVP 300 VGTRSKNYGR VNGNWNATVD LRGMNVHDSS SRLRFGKKNG DGGVKRDLDP FEELVSSITL 360 LTEKFVKVEK MKMEMARETQ KMRMEMEKKH NQMILESQRH IFDSFVSGLL ENKRKKKVKV 420 YVASPKTT

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MPTPSTKRVP PPCWTTDETL ALINAYGARW LSLNRGNLRT SDWDAVSSAV SESTPGASKS  60
SIQCRHKIEK LRKRYRSEKQ RSLSFPGRFV SSWDLFPLLD SMNFGSSSAP GLGNQSRELV  120
DQKVVDVTEF RVKTRNDKSL MSKYGNIDVD FNPDFALRSG FMGNYENIDF GDDFGGLDSR  180
AKDYLKVNGD FGVGFGMKMG VDDTYFVTPQ GFRLKSYENI DDGKSCPRLD FNHGVDGFPV  240
RTFGDRISVP PPGFKAENFV SVEANFKPNA YYDDHADYVV AKGSGSEFYA KSLGDGDFVP  300
VGTRSKNYGR VNGNWNATVD LRGMNVHDSS SRLRFGKKNG DGGVKRDLDP FEELVSSITL  360
LTEKFVKVEK MKMEMARETQ KMRMEMEKKH NQMILESQRH IFDSFVSGLL ENKRKKKVKV  420
YVASPKTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-31	Trihelix family protein