PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64030.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79973.7 Da    PI: 5.758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2059114156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  GAY64030.1  59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                 688999***********************************************999 PP
2START225.41.7e-702494691206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++  lve+l+d++ qW++ +     +a+tlev+s
  GAY64030.1 249 ELAVAAMEELIRMAQMGEPLWMTSLdgtaAVLNEDEYVRTFPRGIGpkptgFKCEASRETAVVIMNHISLVEILMDVN-QWSTVFSgivsRAMTLEVLS 346
                 57899********************999999************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R++++vRy++q+g+g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwvehv++++r +h
  GAY64030.1 347 TGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHGEGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVH 441
                 ********************************************************995....************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+++lv++g a+gak+wvatl+rqce+
  GAY64030.1 442 NLYKQLVSTGNAFGAKRWVATLDRQCER 469
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    
MFQPTNMMEG QLHPLDMTQN TSESEIARLR EEEFDSTKSG SENHEGASGD DQEQRPNKKK  60
RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH  120
ENTQLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR  180
ISAIAAKYVG KPVVNYPLLS PPVPSRPLEL AVGNFGAQPG IGGGEMYGAA DLLRSISAPT  240
EADKPMIIEL AVAAMEELIR MAQMGEPLWM TSLDGTAAVL NEDEYVRTFP RGIGPKPTGF  300
KCEASRETAV VIMNHISLVE ILMDVNQWST VFSGIVSRAM TLEVLSTGVA GNYNGALQVM  360
TAEFQVPSPL VPTRESYYVR YCKQHGEGTW AVVDVSLDNL RPSPAVRCRR RPSGCLIQEM  420
PNGYSKVTWV EHVEVDDRGV HNLYKQLVST GNAFGAKRWV ATLDRQCERL ASVMATNIPT  480
VEVGVITNQD GRKSMLKLAE RMVISFCAGV SASTAHTWTT LSGTGADDVR VMTRKSVDDP  540
GRPPGIVLSA ATSFWLPVPP KRVFDFLRDE NTRSEWDILS NGGVVQEMAH IANGRDTGNC  600
VSLLRVNSAN SSQSNMLILQ ESCTDPTASF VIYAPVDIVA MNVVLNGGDP DYVALLPSGF  660
AILPDGTSLH GANIGEAASG GSLLTVAFQI LVDSVPTAKL SLGSVATVNN LIACTVERIK  720
ASLSCESA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein