PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY64029.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 760aa    MW: 83008.1 Da    PI: 5.98
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY64029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  GAY64029.1  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                 688999***********************************************999 PP
2START225.31.9e-702815011206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r+++vv+m++  lve+l+d++ qW++ +     +a+tlev+s
  GAY64029.1 281 ELAVAAMEELIRMAQMGEPLWMTSLdgtaAVLNEDEYVRTFPRGIGpkptgFKCEASRETAVVIMNHISLVEILMDVN-QWSTVFSgivsRAMTLEVLS 378
                 57899********************999999************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R++++vRy++q+g+g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwvehv++++r +h
  GAY64029.1 379 TGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHGEGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVH 473
                 ********************************************************995....************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+++lv++g a+gak+wvatl+rqce+
  GAY64029.1 474 NLYKQLVSTGNAFGAKRWVATLDRQCER 501
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    
MPTGVMIPAR NMPSTIGRNG NVGGLGSSSG LTLSQPTNMM EGQLHPLDMT QNTSESEIAR  60
LREEEFDSTK SGSENHEGAS GDDQEQRPNK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRTE NEKLRADNMR YREALSNASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVVNYPL LSPPVPSRPL  240
ELAVGNFGAQ PGIGGGEMYG AADLLRSISA PTEADKPMII ELAVAAMEEL IRMAQMGEPL  300
WMTSLDGTAA VLNEDEYVRT FPRGIGPKPT GFKCEASRET AVVIMNHISL VEILMDVNQW  360
STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHGEG  420
TWAVVDVSLD NLRPSPAVRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDR GVHNLYKQLV  480
STGNAFGAKR WVATLDRQCE RLASVMATNI PTVEVGVITN QDGRKSMLKL AERMVISFCA  540
GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV PPKRVFDFLR  600
DENTRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI LQESCTDPTA  660
SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGTS LHGANIGEAA SGGSLLTVAF  720
QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCESA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein