PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY63001.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 424aa MW: 48007.9 Da PI: 5.2263

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY63001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3e-12	211	262	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ GAY63001.1 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 262 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MEKELNYSAN FQGLDYSLDH HHHQHQEELI MKPRIGETSD DRNNNHGMID YMINNNPQPP 60 PKIQQQVSSS SSGFCTSNSF DKLSFADVMQ FAEFGPKLSL NQTNNRVNVP EEETGIIDPV 120 YFLKFPVLND KLDEDDEHSL MLPQPGGCNE NESFKDNDEI RVSDNNSVQQ QLRFLEDDVQ 180 NNKSVVNNGP EAKNKRKRPR AIKTTEEVES QRMTHIAVER NRRKQMNEHL RVLRSLMPGS 240 YVQRGDQASI IGGAIEFVRE LEQLLQCLES QKRRRILGEA AAAPGGGRQM GDSSMAINQQ 300 PQTPLFPPPL PFPNDQIKLM DFETGLREET AENKSCLADV EVKLLGLDAM IKILSRRRPG 360 QLIKAIAALE DLQFNILHTN ITTIEQTVLY SFNVKVASET RFTADDIASS VQQVFSFIHA 420 NSSM

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MEKELNYSAN FQGLDYSLDH HHHQHQEELI MKPRIGETSD DRNNNHGMID YMINNNPQPP  60
PKIQQQVSSS SSGFCTSNSF DKLSFADVMQ FAEFGPKLSL NQTNNRVNVP EEETGIIDPV  120
YFLKFPVLND KLDEDDEHSL MLPQPGGCNE NESFKDNDEI RVSDNNSVQQ QLRFLEDDVQ  180
NNKSVVNNGP EAKNKRKRPR AIKTTEEVES QRMTHIAVER NRRKQMNEHL RVLRSLMPGS  240
YVQRGDQASI IGGAIEFVRE LEQLLQCLES QKRRRILGEA AAAPGGGRQM GDSSMAINQQ  300
PQTPLFPPPL PFPNDQIKLM DFETGLREET AENKSCLADV EVKLLGLDAM IKILSRRRPG  360
QLIKAIAALE DLQFNILHTN ITTIEQTVLY SFNVKVASET RFTADDIASS VQQVFSFIHA  420
NSSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	223	RMTHIAVERNRR
2	272	276	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-133	bHLH family protein