PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY63000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 424aa MW: 48007.9 Da PI: 5.2263 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 3e-12 | 211 | 262 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ GAY63000.1 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 262 79****************************...9*****************9995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence |
MEKELNYSAN FQGLDYSLDH HHHQHQEELI MKPRIGETSD DRNNNHGMID YMINNNPQPP 60 PKIQQQVSSS SSGFCTSNSF DKLSFADVMQ FAEFGPKLSL NQTNNRVNVP EEETGIIDPV 120 YFLKFPVLND KLDEDDEHSL MLPQPGGCNE NESFKDNDEI RVSDNNSVQQ QLRFLEDDVQ 180 NNKSVVNNGP EAKNKRKRPR AIKTTEEVES QRMTHIAVER NRRKQMNEHL RVLRSLMPGS 240 YVQRGDQASI IGGAIEFVRE LEQLLQCLES QKRRRILGEA AAAPGGGRQM GDSSMAINQQ 300 PQTPLFPPPL PFPNDQIKLM DFETGLREET AENKSCLADV EVKLLGLDAM IKILSRRRPG 360 QLIKAIAALE DLQFNILHTN ITTIEQTVLY SFNVKVASET RFTADDIASS VQQVFSFIHA 420 NSSM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 223 | RMTHIAVERNRR |
2 | 272 | 276 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 1e-133 | bHLH family protein |