PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY62924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 579aa MW: 63895.7 Da PI: 8.3045 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.5 | 8.9e-17 | 355 | 401 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq GAY62924.1 355 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401 6*************************8.....6******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 579 aa Download sequence |
MQQIFVSSAM NPCIPDWNFE GDIPISNQMK PMGQDNELVE LLWQNGHVVL SSQAQTQRKP 60 SLNHNEPRQV QKQTLRGSGS CGNSSNLIQD DETVSWIHCP IEDSFEKDFY SQLFSELPPS 120 GPMEVDKHTR QLREEKMVKF DPPGAVTSSQ HPNVNHSVVP ELQRNAMPPP RFEVHDAAQQ 180 NKNLGDLGKV VNFSQSTAPP KGELGPCSGQ FDRKRSGNLT QGEVRECSMM TVGSSHCGSN 240 QVAYDLDMSR ASSSGVGTTG LSPGKLNDDV RKVISPSERG KTETIEPTVT SSSGGSGSSF 300 NRTSKQSTGD NSLKRKSRDA VDSECQSEAA GFESGAGNKT AQRSGSCRRS RAAEVHNLSE 360 RRRRDRINEK MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPLMFPG 420 MQHYMSRMGM GMGPPPLPSV TNPMHFSRVP LVDQSMSMAQ AQNRAVMCQA SVLNPVNYQN 480 QMQNSNFTDQ YARYMGFHPM QANSQPMNMF RFGSPTMQNQ IVSLPSSSCV PFSGGAATDN 540 SPLSGKMEKE GGRDRRGRHA PPPATSKTGK IRFSCYEWW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 360 | 365 | ERRRRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59060.1 | 8e-51 | bHLH family protein |