PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY62923.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 582aa MW: 64242.1 Da PI: 8.3045

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY62923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.5	9e-17	355	401	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq GAY62923.1 355 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MQQIFVSSAM NPCIPDWNFE GDIPISNQMK PMGQDNELVE LLWQNGHVVL SSQAQTQRKP 60 SLNHNEPRQV QKQTLRGSGS CGNSSNLIQD DETVSWIHCP IEDSFEKDFY SQLFSELPPS 120 GPMEVDKHTR QLREEKMVKF DPPGAVTSSQ HPNVNHSVVP ELQRNAMPPP RFEVHDAAQQ 180 NKNLGDLGKV VNFSQSTAPP KGELGPCSGQ FDRKRSGNLT QGEVRECSMM TVGSSHCGSN 240 QVAYDLDMSR ASSSGVGTTG LSPGKLNDDV RKVISPSERG KTETIEPTVT SSSGGSGSSF 300 NRTSKQSTGD NSLKRKSRDA VDSECQSEAA GFESGAGNKT AQRSGSCRRS RAAEVHNLSE 360 RRRRDRINEK MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQMSQVM WMGSGMAPLM 420 FPGMQHYMSR MGMGMGPPPL PSVTNPMHFS RVPLVDQSMS MAQAQNRAVM CQASVLNPVN 480 YQNQMQNSNF TDQYARYMGF HPMQANSQPM NMFRFGSPTM QNQIVSLPSS SCVPFSGGAA 540 TDNSPLSGKM EKEGGRDRRG RHAPPPATSK TGKIRFSCYE WW

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MQQIFVSSAM NPCIPDWNFE GDIPISNQMK PMGQDNELVE LLWQNGHVVL SSQAQTQRKP  60
SLNHNEPRQV QKQTLRGSGS CGNSSNLIQD DETVSWIHCP IEDSFEKDFY SQLFSELPPS  120
GPMEVDKHTR QLREEKMVKF DPPGAVTSSQ HPNVNHSVVP ELQRNAMPPP RFEVHDAAQQ  180
NKNLGDLGKV VNFSQSTAPP KGELGPCSGQ FDRKRSGNLT QGEVRECSMM TVGSSHCGSN  240
QVAYDLDMSR ASSSGVGTTG LSPGKLNDDV RKVISPSERG KTETIEPTVT SSSGGSGSSF  300
NRTSKQSTGD NSLKRKSRDA VDSECQSEAA GFESGAGNKT AQRSGSCRRS RAAEVHNLSE  360
RRRRDRINEK MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQMSQVM WMGSGMAPLM  420
FPGMQHYMSR MGMGMGPPPL PSVTNPMHFS RVPLVDQSMS MAQAQNRAVM CQASVLNPVN  480
YQNQMQNSNF TDQYARYMGF HPMQANSQPM NMFRFGSPTM QNQIVSLPSS SCVPFSGGAA  540
TDNSPLSGKM EKEGGRDRRG RHAPPPATSK TGKIRFSCYE WW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	365	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	3e-42	bHLH family protein