PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY62283.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 543aa MW: 60560.9 Da PI: 6.6063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY62283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.9e-12	366	410	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka+ L + eY++sL GAY62283.1 366 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 410 8899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MDTAFQLEEA ARANFFQSVM QTFGCTYICL WSYSQQSNCL VFLDGWYHEE NNQPSSSSAS 60 LARRFFHDYC QSFVPIVDYG SRLPGLAFKN GQQYIEVNAP ELQRLAFTES QRQFYQTAVF 120 MACKSGEIEL GLCGGSQGNM EMEMRSLFQE DFKDQQSPAA AGGRPIQSSS SSSLRSLSMD 180 SPSEYSSLLF NIPTSSHLSE TLIDVVPNLQ PLTTTTTAAS TSTSISTTAG NTRTNTSLQQ 240 AQQAMEAFAQ LQNIQLPIIQ ETEQDAMTRA ILAVLTSPTS SSSSSQQQQQ QQQQQEQPQQ 300 HLAPPKASAF KNYNLVLAPT SNIRAISAFR GQSILKRTIS YYRRLNIARR EYTAGPSRPT 360 STQLHHMISE RKRREKLNES FHALRSLLPP GTKKDKASLL INTREYLSSL KAQVDELSRR 420 NQILEAQVLP KAREAAAAAS VNAEERVQVR VSPVAESTSE WRMVDIRVIV RGECPALDLV 480 IRILEFLKGD DNLSLISVEA NTQIAADSTS FNHVILRLRI QGNEWDESAF EEAVRRVVGD 540 LAH

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MDTAFQLEEA ARANFFQSVM QTFGCTYICL WSYSQQSNCL VFLDGWYHEE NNQPSSSSAS  60
LARRFFHDYC QSFVPIVDYG SRLPGLAFKN GQQYIEVNAP ELQRLAFTES QRQFYQTAVF  120
MACKSGEIEL GLCGGSQGNM EMEMRSLFQE DFKDQQSPAA AGGRPIQSSS SSSLRSLSMD  180
SPSEYSSLLF NIPTSSHLSE TLIDVVPNLQ PLTTTTTAAS TSTSISTTAG NTRTNTSLQQ  240
AQQAMEAFAQ LQNIQLPIIQ ETEQDAMTRA ILAVLTSPTS SSSSSQQQQQ QQQQQEQPQQ  300
HLAPPKASAF KNYNLVLAPT SNIRAISAFR GQSILKRTIS YYRRLNIARR EYTAGPSRPT  360
STQLHHMISE RKRREKLNES FHALRSLLPP GTKKDKASLL INTREYLSSL KAQVDELSRR  420
NQILEAQVLP KAREAAAAAS VNAEERVQVR VSPVAESTSE WRMVDIRVIV RGECPALDLV  480
IRILEFLKGD DNLSLISVEA NTQIAADSTS FNHVILRLRI QGNEWDESAF EEAVRRVVGD  540
LAH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	370	375	ERKRRE
2	371	376	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-77	bHLH family protein