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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GAY61863.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 293aa MW: 33213.1 Da PI: 7.1447 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 54.7 | 1.7e-17 | 77 | 129 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
GAY61863.1 77 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 129
4568889*********************************************9 PP
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| 2 | HD-ZIP_I/II | 128.5 | 2.7e-41 | 75 | 166 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekk+rl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk++++alk++n++L++++++L++el
GAY61863.1 75 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELV 166
69**************************************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 293 aa Download sequence |
MAFPPHSFMF QSHEDNDHLP SPTSLNSLPA PHFFHGAPFM MKRSMSFSGV NDKCHEDHHV 60 HGDEDLSDDG SQVGEKKKRL NLEQVKALEK SFELGNKLEP ERKLQLARAL GLQPRQIAIW 120 FQNRRARWKT KQLEKDYEVL KKQFEALKAD NDSLQAQNKK LHAELVSLKN KDSNNGQVIH 180 LKKENEGSAS NGSDNSSDIN LDISRTQVIT SPVSSSHLTS KQLFPTSTRP AAGSMTQLLQ 240 GSSIPDHLQC LKIDHHQMVQ VQDESFCHMF NGIEEQQATA SSFWQWPGQQ NFH |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 124 | 132 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G15150.1 | 5e-90 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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