PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60910.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 487aa MW: 54356.2 Da PI: 8.03

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.6e-08	359	406	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d++ q+G g W+ I r + +Rt+ +++++w+++l GAY60910.1 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 406 **********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MDKGPLLLEN VRNMTSQRVK VEESFVPAFK DKAAEVSNLL AEPKCDHASV DGVLSFGREN 60 LGKSSGMDGF SYEFEFGFRT NCGGLDSFTT QGEDDLKLEV LDGLLDDIDE VDDFHAANDL 120 STVCDDFLLD IEFTEKVAKF DCGPVEGSHL GNSSSESHSP GASGSNVAVG MSDSSITALE 180 SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD NVLLSSILSK 240 CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK HPKVTPCNGS 300 SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID DRRKNQRMWT 360 LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY AHQKNKGEVD 420 PKHAMRSLPK PVLCRIRELA TIHPYPRVPY SKKCNGNTDS SRHPIKAKSA PFSSHGRNLR 480 RTTIKEQ

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MDKGPLLLEN VRNMTSQRVK VEESFVPAFK DKAAEVSNLL AEPKCDHASV DGVLSFGREN  60
LGKSSGMDGF SYEFEFGFRT NCGGLDSFTT QGEDDLKLEV LDGLLDDIDE VDDFHAANDL  120
STVCDDFLLD IEFTEKVAKF DCGPVEGSHL GNSSSESHSP GASGSNVAVG MSDSSITALE  180
SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD NVLLSSILSK  240
CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK HPKVTPCNGS  300
SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID DRRKNQRMWT  360
LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY AHQKNKGEVD  420
PKHAMRSLPK PVLCRIRELA TIHPYPRVPY SKKCNGNTDS SRHPIKAKSA PFSSHGRNLR  480
RTTIKEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	354	KRKSKIDDRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-23	MYB_related family protein