PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60859.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 1071aa MW: 121099 Da PI: 6.0697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	427	471	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT eE++ l+ +++ G +W Ia+ +g++Rt+ qc r+q GAY60859.1 427 NPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQR 471 69*****************************************96 PP
2	Myb_DNA-binding	48.2	2.5e-15	479	525	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r WT+eEde+l av+ +G +W ++a+t+ gRt+ qc +rw+k l GAY60859.1 479 RREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTL 525 678**************************9.**********975 PP
3	Myb_DNA-binding	50.7	4.1e-16	533	576	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grW ++Ed++l+ a ++G+++Wk+Ia+ ++ gRt qc++rw + GAY60859.1 533 GRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVN 576 8****************************.*********87 PP
4	Myb_DNA-binding	43	1e-13	584	626	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r WT++Ed++l a+k++G W+++a+ ++ Rt++qc rw GAY60859.1 584 RSEWTEQEDLRLEAAIKEHGYC-WSKVASALP-SRTDNQCWRRWK 626 789***************99.*****.*********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1071 aa Download sequence
MSHRNDYDDG EEFSGSENDD AFDEDMEALR RACMIIRTDA DDLEKTDYHH LPDAAAPSAT 60 AADEWSSDGE GDLELVRSIQ NRLALSNDLC QPLSLEALCT LPPVVSDDDE EDDFETLHVI 120 QKRFSAYDSA DNNKSSVEVH ESASVVASGE DKNSNNLFEN RIDSCEEARN DETLTNLPQP 180 CASSTEWHQS DECNRLSVLS QKQSSNFPKS AQVFIDAIKK NRSYQKFIRS KLTQIESRIE 240 ENNKLKERVK ILKDFQVSCR KVTGRALSQK KDLRVQLISS SCNSRKSKDS EGTNKKLSAL 300 NYGPAENSQV ANYKMAMSKS PLSLHRKKWS KKENENLRKG IRQQFQEMML QLSVDRFSVP 360 EGSATDTNSL DSILASIKDL EVTPEMIRDF LPKVNWDQVA SMYVQGRSGA ECEARWLNFE 420 DPLINHNPWT VEEEKSLLLI IQEKGITDWF DIAASLGTNR TPFQCLARYQ RSLNACILRR 480 EWTKEEDEQL RIAVEAYGES NWQSVASTLK GRTGTQCSNR WNKTLHPSRE RQGRWNPDED 540 QRLIVATMLF GPRNWKKIAQ FVPGRTQVQC RERWVNSLDP SVKRSEWTEQ EDLRLEAAIK 600 EHGYCWSKVA SALPSRTDNQ CWRRWKALHP EAVPLFLEAK KIQKTALVSN FVDRERERPA 660 LRPNDFIPIP MLESAFQPEE PNASKKRKRK SSNTHKKIKP NRCRKEAEVC SEEVLGITNS 720 DVMDISDQQD ATQKKKKVKP RSTKKKAGCG SVATEKSSKK GSKSRPSAEL DESSQSILLQ 780 PPKKENQRNT NDDDNNFSLE DTDKARRQGH GIKRCNEPSG ECQGLACSSC QQDASKTSKP 840 RSKSHFKNRL QASDGDNIPL ACFLHNKPKK KKLEVPKIAD QPCSSNGEET MGSLLPFETV 900 DQQSNEQPIL SQMQNGEVHT CHNAGTPEDM SLCKMRSSHL KDMQIMVVSD ECIGEDKVEG 960 GVTDKVEGAT TSPSEPVSEA MPDINLEDEI EACDFTLASW LNRSSLSTQS SLNNMQNVLA 1020 SDMELERGDE VKGATITPHE PVREPMSNNH KDDIDDADIP LAFLRRKLKK K

Sequence ? help Back to Top

Protein Sequence Length: 1071 aa Download sequence

MSHRNDYDDG EEFSGSENDD AFDEDMEALR RACMIIRTDA DDLEKTDYHH LPDAAAPSAT  60
AADEWSSDGE GDLELVRSIQ NRLALSNDLC QPLSLEALCT LPPVVSDDDE EDDFETLHVI  120
QKRFSAYDSA DNNKSSVEVH ESASVVASGE DKNSNNLFEN RIDSCEEARN DETLTNLPQP  180
CASSTEWHQS DECNRLSVLS QKQSSNFPKS AQVFIDAIKK NRSYQKFIRS KLTQIESRIE  240
ENNKLKERVK ILKDFQVSCR KVTGRALSQK KDLRVQLISS SCNSRKSKDS EGTNKKLSAL  300
NYGPAENSQV ANYKMAMSKS PLSLHRKKWS KKENENLRKG IRQQFQEMML QLSVDRFSVP  360
EGSATDTNSL DSILASIKDL EVTPEMIRDF LPKVNWDQVA SMYVQGRSGA ECEARWLNFE  420
DPLINHNPWT VEEEKSLLLI IQEKGITDWF DIAASLGTNR TPFQCLARYQ RSLNACILRR  480
EWTKEEDEQL RIAVEAYGES NWQSVASTLK GRTGTQCSNR WNKTLHPSRE RQGRWNPDED  540
QRLIVATMLF GPRNWKKIAQ FVPGRTQVQC RERWVNSLDP SVKRSEWTEQ EDLRLEAAIK  600
EHGYCWSKVA SALPSRTDNQ CWRRWKALHP EAVPLFLEAK KIQKTALVSN FVDRERERPA  660
LRPNDFIPIP MLESAFQPEE PNASKKRKRK SSNTHKKIKP NRCRKEAEVC SEEVLGITNS  720
DVMDISDQQD ATQKKKKVKP RSTKKKAGCG SVATEKSSKK GSKSRPSAEL DESSQSILLQ  780
PPKKENQRNT NDDDNNFSLE DTDKARRQGH GIKRCNEPSG ECQGLACSSC QQDASKTSKP  840
RSKSHFKNRL QASDGDNIPL ACFLHNKPKK KKLEVPKIAD QPCSSNGEET MGSLLPFETV  900
DQQSNEQPIL SQMQNGEVHT CHNAGTPEDM SLCKMRSSHL KDMQIMVVSD ECIGEDKVEG  960
GVTDKVEGAT TSPSEPVSEA MPDINLEDEI EACDFTLASW LNRSSLSTQS SLNNMQNVLA  1020
SDMELERGDE VKGATITPHE PVREPMSNNH KDDIDDADIP LAFLRRKLKK K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	685	690	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein