PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY60319.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 229aa MW: 25935.9 Da PI: 9.3684

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY60319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	120	139	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+k+F+r n + H+ GAY60319.1 120 FSCPICSKTFNRYNNSQMHM 139 89**************9998 PP
2	zf-C2H2	16.1	3.1e-05	204	226	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ GAY60319.1 204 FMCRKCGKPFAVKGDWRTHEKNC 226 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MIHCLGDDFV LHVCMITPQW AVMTARRKPG LLIWMSDDKI NSTNDDGEET VTVALHIGLP 60 NRSSSSDHDL DSIRLSSSAD VTAKTEDKIK EGVVMSLERL NKGQYWIPTA SQILIGPTQF 120 SCPICSKTFN RYNNSQMHMW GHGSQYRKGP DSLRGTQPTA MLKLPCYCCA QGCKHNIDHP 180 KARPLKDFRT LQTQYKRKHG IKPFMCRKCG KPFAVKGDWR THEKNCGRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	3e-90	C2H2 family protein