PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59617.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 588aa MW: 64253.6 Da PI: 9.1554

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	260	277	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR++iN++ GAY59617.1 260 RSKHSATEQRRRSKINDR 277 889*************96 PP
2	HLH	24.4	5.4e-08	300	332	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq GAY59617.1 300 QFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 332 5999*****9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MELPQSRPFG TEGRRPTHDF LSLYSHSTVQ QDPRPPSQGG FLKTHDFLQV GKINAKEEST 60 LEITSIVEKP PPPAPPPPSS SSVEHNLPGG IGTYSISHVS YFGQKVPKPE GSLFAVAQTS 120 STEKNDENSN CSSYTGSGFT LWEESAVKKG KAGKENAGER AIGRGEATVN VGQWVSQSSS 180 TNNSHRNSFS SLSCSQPPGM KSQSFMEMIK SAKGSTHDDD LDDADEFILK RENSTTTNHK 240 GDLRVKVEGK SNDQKPNTPR SKHSATEQRR RSKINDRQVF YVYVSKTLTV SYDIEMYITQ 300 FQMLRELIPH SDQKRDKASF LLEVIEYIQF LQEKVHKYEG PFVGWNPERA KLAPWKNNHK 360 HAESYVDQSQ GINNGSATAL VFAAKFNEKN ASISPAIPGS AQKPVESDMT SASTFKTMDP 420 QPGITNKAMP FPMSLQPNCY KPVRNGGAAP SLRPRLASDA ENTTSQPQTL ECHTRSCTGD 480 MPISNNKKLK EQELTVEGGR INISTAYSQG LLKTLTQALQ SSGVDLSQAS VSVQIDLGKR 540 AAQAPITLAS NLKGNEVPAS NQGTTGSRDR NGGEGSNQAL KKQKIDKC

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MELPQSRPFG TEGRRPTHDF LSLYSHSTVQ QDPRPPSQGG FLKTHDFLQV GKINAKEEST  60
LEITSIVEKP PPPAPPPPSS SSVEHNLPGG IGTYSISHVS YFGQKVPKPE GSLFAVAQTS  120
STEKNDENSN CSSYTGSGFT LWEESAVKKG KAGKENAGER AIGRGEATVN VGQWVSQSSS  180
TNNSHRNSFS SLSCSQPPGM KSQSFMEMIK SAKGSTHDDD LDDADEFILK RENSTTTNHK  240
GDLRVKVEGK SNDQKPNTPR SKHSATEQRR RSKINDRQVF YVYVSKTLTV SYDIEMYITQ  300
FQMLRELIPH SDQKRDKASF LLEVIEYIQF LQEKVHKYEG PFVGWNPERA KLAPWKNNHK  360
HAESYVDQSQ GINNGSATAL VFAAKFNEKN ASISPAIPGS AQKPVESDMT SASTFKTMDP  420
QPGITNKAMP FPMSLQPNCY KPVRNGGAAP SLRPRLASDA ENTTSQPQTL ECHTRSCTGD  480
MPISNNKKLK EQELTVEGGR INISTAYSQG LLKTLTQALQ SSGVDLSQAS VSVQIDLGKR  540
AAQAPITLAS NLKGNEVPAS NQGTTGSRDR NGGEGSNQAL KKQKIDKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-113	bHLH family protein