PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY59604.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 472aa    MW: 54086.3 Da    PI: 5.8199
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY59604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.46.1e-2641120186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+e+laL+++r+em+ +++++  k+plWee s+k+++ g++rs+k+Ckek+en+ k++++++eg+++      +t+++fdql+
  GAY59604.1  41 RWPKHETLALLKIRSEMDAAFKDSGVKAPLWEEASRKLSQLGYNRSAKKCKEKFENIYKYHRRTREGRSG------KTYRFFDQLQ 120
                 8*******************************************************************98......4799****98 PP
2trihelix105.34.5e-33303388187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k+ev aLi++r++++ ++ ++  k+plWe++s++m++ g+ rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  GAY59604.1 303 RWPKDEVEALIRLRSNLDGHYHESGPKGPLWEDISAAMKKLGYDRSAKRCKEKWENMNKYFKKVKESNKKR-PEDAKTCPYFHQLDA 388
                 8*********************************************************************8.99999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    
METSTLPENS GEDTGNRENG GWEEDGRVKG EEGDRNFGGN RWPKHETLAL LKIRSEMDAA  60
FKDSGVKAPL WEEASRKLSQ LGYNRSAKKC KEKFENIYKY HRRTREGRSG KTYRFFDQLQ  120
ALDNSHSFLP ISSPERINSS MAIDVDPISE IKNDIQNQIS SFMDVSTSTT STSSKESDGT  180
QTKKKRKLTE FFERLMREVI EKQENLQKKF IEAIEKCEQE RIAREEAWKM QELARIKRER  240
ELLVQERSIA AAKDAAVLAF LQKFSDQPCP VQLSATPISV EKAVERQENC NGCESFNHIG  300
SSRWPKDEVE ALIRLRSNLD GHYHESGPKG PLWEDISAAM KKLGYDRSAK RCKEKWENMN  360
KYFKKVKESN KKRPEDAKTC PYFHQLDALY KEKTAKKVDN PVNPAYELKP EELLMHMMSA  420
QGQQQEVESL TENGENENAN RSQEGDNEDN EDNEGDDYQL VATNPSSVAI TG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-117Trihelix family protein