PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59213.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 487aa MW: 53669.1 Da PI: 5.2326

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	307	349	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L GAY59213.1 307 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 349 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MILEPNGAVW MEGEEEQPLS VSWTTAAAAT ATTTARATTE PKEDEMHVNA VSLSGFKSIL 60 DTDWFLNSTL NNPPQDFTNT TGLLETHQEL RAFNAFQETN LFFQPIESHP FTLNPTHSLL 120 PPNNNDNNSN SHLPFVSGFD LGGEAAGFIQ PGSGFMGLTT TQICATNDSD FHGFGSSYSN 180 CFDNLEGLFF NSNSKAKVCS QSQPTLFEKR AALRQSSGKL ESLEILGGNL LLENIKCRKN 240 EEASVDISSL NYESDEYNNN NNNNNASNDN NVNGKVDESV KNWNAGGSAT VGDNKGKRKG 300 LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHNEL 360 ESTPTGSLMQ PSTSIQPMTP TPPTLPCRVK EEISRSPTGE AARVEVRIRE GRAVNIHMFC 420 ARRPGLLLST MRALDSLGLD IQQAVISCFN GFALDVFRAE QCREGQDVLP KQIKSVLLDT 480 AGFHDVM

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MILEPNGAVW MEGEEEQPLS VSWTTAAAAT ATTTARATTE PKEDEMHVNA VSLSGFKSIL  60
DTDWFLNSTL NNPPQDFTNT TGLLETHQEL RAFNAFQETN LFFQPIESHP FTLNPTHSLL  120
PPNNNDNNSN SHLPFVSGFD LGGEAAGFIQ PGSGFMGLTT TQICATNDSD FHGFGSSYSN  180
CFDNLEGLFF NSNSKAKVCS QSQPTLFEKR AALRQSSGKL ESLEILGGNL LLENIKCRKN  240
EEASVDISSL NYESDEYNNN NNNNNASNDN NVNGKVDESV KNWNAGGSAT VGDNKGKRKG  300
LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHNEL  360
ESTPTGSLMQ PSTSIQPMTP TPPTLPCRVK EEISRSPTGE AARVEVRIRE GRAVNIHMFC  420
ARRPGLLLST MRALDSLGLD IQQAVISCFN GFALDVFRAE QCREGQDVLP KQIKSVLLDT  480
AGFHDVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	315	KRKGLPAKNLMAERRRRKK
2	309	316	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-109	bHLH family protein