PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59058.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 879aa MW: 96870.5 Da PI: 6.3822

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	3e-06	475	495	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G C+ Gd+CkF+H+ GAY59058.1 475 YCHHYLK-GRCQEGDKCKFSHD 495 6****.***********7 PP
2	zf-CCCH	21.2	5.2e-07	530	550	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +f + G+C++Gd+C F+H GAY59058.1 530 PCENFVAKGFCNRGDNCLFSH 550 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MAQMERSQVE TTSFCFSPHR HLKSETYRAL VQILSHCYDH SQISAAQDSR PGMCGSGELV 60 GPNAAVVDNS LAEKDKAGDE DRWFGDAQIV LDEIQDILQV EENGNLLKQE LAVCDGDYET 120 GNFDEGLGQQ RMLMDELEHI LKGDVIFVHE EDALVNDRQE HVDIQQIVNV ESRSEAELQV 180 DKGDSNLDVP KSFDSSVDRN MDSHASKPAE DSEERNSKLR TNSLEFENEM QQKEMEEEKL 240 VHTNGIIGAH DHRAEDVEVE EGEISGHFEV DEVSIDMIID NAVVSNEKKE DEEQVSKDVT 300 DKTDFPCNEK CGGTEKFSDS TSVCLNAVDH NASGGTVELQ ETVRNETQCK TKIFADGTAT 360 MAIDPDRYNS MPGVGRNKRK ASRDEEGISS FSASLDDSTV QKEVVKQRVT QEQGITTKDK 420 LDSGACNKRK RSALSKEKKA KKKQKERKKR AEKNRQLGVR RLKLPQNLKP KTVKYCHHYL 480 KGRCQEGDKC KFSHDTVPLT KSTKACCHFA RNSCMKGDNC PFDHDLSKYP CENFVAKGFC 540 NRGDNCLFSH KLPPKEQDPP TPSTCTPELK PSPPLYASNL LKPLNNNKVS HQNVDALSNH 600 GKVSSFKNIE QSVAKSILKP PALAPKGISY LFLGKSSFLE ASNLGQGISS PKKSDSSKFA 660 NQTAQIASDS VQSRDETPRR IPVATKGVNF LSFGNRSLED SSGKKLANLF LNRENGAKTS 720 LSNNFGLHET SSSSSCGEND AEVGNATTQI FSNSVQKSND MPKKTQPAIT PRGLNFLSTG 780 KALANNTISN NQARLRSSAG DVINRSLEES PNTPNMSQNS SANPWSLPGS SFTLGHSLDH 840 SAQGYYRSTS NSAQRALEFA TKIEPKVKTN QSTVGTAVK

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MAQMERSQVE TTSFCFSPHR HLKSETYRAL VQILSHCYDH SQISAAQDSR PGMCGSGELV  60
GPNAAVVDNS LAEKDKAGDE DRWFGDAQIV LDEIQDILQV EENGNLLKQE LAVCDGDYET  120
GNFDEGLGQQ RMLMDELEHI LKGDVIFVHE EDALVNDRQE HVDIQQIVNV ESRSEAELQV  180
DKGDSNLDVP KSFDSSVDRN MDSHASKPAE DSEERNSKLR TNSLEFENEM QQKEMEEEKL  240
VHTNGIIGAH DHRAEDVEVE EGEISGHFEV DEVSIDMIID NAVVSNEKKE DEEQVSKDVT  300
DKTDFPCNEK CGGTEKFSDS TSVCLNAVDH NASGGTVELQ ETVRNETQCK TKIFADGTAT  360
MAIDPDRYNS MPGVGRNKRK ASRDEEGISS FSASLDDSTV QKEVVKQRVT QEQGITTKDK  420
LDSGACNKRK RSALSKEKKA KKKQKERKKR AEKNRQLGVR RLKLPQNLKP KTVKYCHHYL  480
KGRCQEGDKC KFSHDTVPLT KSTKACCHFA RNSCMKGDNC PFDHDLSKYP CENFVAKGFC  540
NRGDNCLFSH KLPPKEQDPP TPSTCTPELK PSPPLYASNL LKPLNNNKVS HQNVDALSNH  600
GKVSSFKNIE QSVAKSILKP PALAPKGISY LFLGKSSFLE ASNLGQGISS PKKSDSSKFA  660
NQTAQIASDS VQSRDETPRR IPVATKGVNF LSFGNRSLED SSGKKLANLF LNRENGAKTS  720
LSNNFGLHET SSSSSCGEND AEVGNATTQI FSNSVQKSND MPKKTQPAIT PRGLNFLSTG  780
KALANNTISN NQARLRSSAG DVINRSLEES PNTPNMSQNS SANPWSLPGS SFTLGHSLDH  840
SAQGYYRSTS NSAQRALEFA TKIEPKVKTN QSTVGTAVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	428	450	KRKRSALSKEKKAKKKQKERKKR
2	428	453	KRKRSALSKEKKAKKKQKERKKRAEK
3	429	451	KRKRSALSKEKKAKKKQKERKKR
4	438	450	KKAKKKQKERKKR