PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY59045.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 773aa MW: 83053.6 Da PI: 6.4303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY59045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	469	515	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq GAY59045.1 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
MPLFELYQMT KEKLDSAKQK NPSSSTDLSF EPENDLVELV WENGQILKQG QSSRTKKSPT 60 SNSLPSYCLP SHTPKNRDKD LGKTGKFGTV DAMLNGIQMS DPSGEMGLNQ DDDMVPWLNY 120 AVDESLQQDY CSDFLHELSG VTGNELSNQN NFASFDKRSS SNQFDREFNS VFGNHGARLE 180 HGNVSKVSSV GGGEATRPRS STNPLYTSSS QQCQTSFPNL RSVVSDSTSN GIKNSTDNGI 240 FQGSNPTATG NLSGLKLHKQ DQRLSTNNSG VMNFSHFARP VALVRANLQN IGSMPGARLS 300 RIERMGSKDK SSVASRSPVE SPLIDSSGCL RKESSCQPAA VTSKVDVKPQ EAKSSEQPVS 360 EPPEAACRED ALNNDKKPSQ VHAESATKGV VESEKTVEPV VAASSVCSGN SVERASDDLP 420 HNVKRKHCDL DDSECPSEEQ DVEEESVGVK KQVPGRVGTG SKRSRAAEVH NLSERRRRDR 480 INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGFYMP PMMYPSGMQH 540 MHAAHMAHFP PIGIGMGMGI GYGMGMPDIN GGSSCYPMVQ VPAMHGAHFP GTSFSGSSAL 600 QGMAGSNFQL LGLPAQGHPM SMPHAPLNPL SGGPIMKSAM GLNPTGMVGS MDNTDAAKGS 660 TSKDLVQNVN SQVKQNTGAK GPVDQASGQC EATNESSAEP AAVQDNCQAS EVNGPVTYNS 720 SRKNENESNV CIGELLIILQ PAFSLPYPAR RSLKDSAVSN HEQGSMPGHV YKS

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

MPLFELYQMT KEKLDSAKQK NPSSSTDLSF EPENDLVELV WENGQILKQG QSSRTKKSPT  60
SNSLPSYCLP SHTPKNRDKD LGKTGKFGTV DAMLNGIQMS DPSGEMGLNQ DDDMVPWLNY  120
AVDESLQQDY CSDFLHELSG VTGNELSNQN NFASFDKRSS SNQFDREFNS VFGNHGARLE  180
HGNVSKVSSV GGGEATRPRS STNPLYTSSS QQCQTSFPNL RSVVSDSTSN GIKNSTDNGI  240
FQGSNPTATG NLSGLKLHKQ DQRLSTNNSG VMNFSHFARP VALVRANLQN IGSMPGARLS  300
RIERMGSKDK SSVASRSPVE SPLIDSSGCL RKESSCQPAA VTSKVDVKPQ EAKSSEQPVS  360
EPPEAACRED ALNNDKKPSQ VHAESATKGV VESEKTVEPV VAASSVCSGN SVERASDDLP  420
HNVKRKHCDL DDSECPSEEQ DVEEESVGVK KQVPGRVGTG SKRSRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGFYMP PMMYPSGMQH  540
MHAAHMAHFP PIGIGMGMGI GYGMGMPDIN GGSSCYPMVQ VPAMHGAHFP GTSFSGSSAL  600
QGMAGSNFQL LGLPAQGHPM SMPHAPLNPL SGGPIMKSAM GLNPTGMVGS MDNTDAAKGS  660
TSKDLVQNVN SQVKQNTGAK GPVDQASGQC EATNESSAEP AAVQDNCQAS EVNGPVTYNS  720
SRKNENESNV CIGELLIILQ PAFSLPYPAR RSLKDSAVSN HEQGSMPGHV YKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	479	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-54	bHLH family protein