PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY58839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 155aa MW: 17420.7 Da PI: 8.6951 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.2e-11 | 57 | 79 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C++Gd+Ck+ H++ GAY58839.1 57 VCSRFVKTGFCPFGDSCKYLHPK 79 5********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MPLGKYYCDY CDKQFQDTYF ARKRHLQGIQ HLRAKALWYD SLNETNQTYL DGFPKGVCSR 60 FVKTGFCPFG DSCKYLHPKN NPAQNTGNQG LRATGFTDIN ARSSSVDQRI YLAGGSSFPG 120 DMMRDSMGMS WGNLPPSLKP PPEGGYPLLP FVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 4e-50 | C3H family protein |