PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GAY58472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28724 Da PI: 6.588 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 142 | 182 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L GAY58472.1 142 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 182 699*****************87.....8****************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence |
MDMNQNKLIN HSWDVEMAME DHQIFHHDPS AFSSSSSPSL WPSFNNFPLQ TNTQILPSSS 60 RHIIQPSSST LLFGDHNNNN NNNNNNIIDQ EEDEEPEEEL GAMKEMMYRI AAMQPVDIDP 120 TTIRKPKRRN IRISDDPQSV AARHRRERIS EKIRILQRLV PGGTKMDTAS MLDEAIRYVK 180 FLKRQIRLLQ SNQCNIVGDD HYNKLSLGAT TNTTIATTTA SASAAGALDP ILGHSLPFNG 240 NRNSSFYFNH HEVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00120.1 | 3e-47 | bHLH family protein |