PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57856.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 353aa MW: 39245.3 Da PI: 9.4602

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.7	2.6e-22	42	133	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+ + +++k+ s+ ss++++f++++a GAY57856.1 42 CWSHDETVALIDAYRDKWYALRRGNLKATHWQEVADAVgrrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFSSSWVHFKRMDA 133 8*********************************9977666677799*********************9779**********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MSSPPTPQDP IPQETPPPPP APLPAPPVHT PSVNPRRLPP PCWSHDETVA LIDAYRDKWY 60 ALRRGNLKAT HWQEVADAVG RRCPAASPAK TAVQCRHKME KLRKRYRTEI QRAKSMPLSR 120 FSSSWVHFKR MDAMEKGPSV KADYNSDSGD DDDNDDEDDE DLNQDLYQDR SNFKNGVVNT 180 RSVHNLYRNG INSGPSSGGG SGFRIRIPTG VSIAQPGPKI YAKIGTNPNP NPNPNFNHKP 240 NFGSASGSGS GPAVNYGTRV LRGCDDTGTG MGKREREPVV AEMVAAIRML GDGFVKMEQM 300 KMEMAREIET MRMEMEMKRT EMILDSQQRI VEAFAKAVSE KSKKPKRMPD SES

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MSSPPTPQDP IPQETPPPPP APLPAPPVHT PSVNPRRLPP PCWSHDETVA LIDAYRDKWY  60
ALRRGNLKAT HWQEVADAVG RRCPAASPAK TAVQCRHKME KLRKRYRTEI QRAKSMPLSR  120
FSSSWVHFKR MDAMEKGPSV KADYNSDSGD DDDNDDEDDE DLNQDLYQDR SNFKNGVVNT  180
RSVHNLYRNG INSGPSSGGG SGFRIRIPTG VSIAQPGPKI YAKIGTNPNP NPNPNFNHKP  240
NFGSASGSGS GPAVNYGTRV LRGCDDTGTG MGKREREPVV AEMVAAIRML GDGFVKMEQM  300
KMEMAREIET MRMEMEMKRT EMILDSQQRI VEAFAKAVSE KSKKPKRMPD SES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-75	Trihelix family protein