PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57633.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 556aa MW: 60068.8 Da PI: 9.0442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	85	105	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H GAY57633.1 85 CEICNKGFQRDQNLQLHRRGH 105 *******************88 PP
2	zf-C2H2	11.7	0.0008	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + GAY57633.1 159 WKCEKCSKKYAVQSDWKAHSKIC 181 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP 60 GNPDPDAEVI ALSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKVER 120 KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI 180 CGTREYKCDC GKLFSRRDSF ITHRAFCDVL AEESARTITV NPLFSPSQQQ PNSSATHMLN 240 FPSHHHHQLQ SQGLQALQLQ AVKIEDNNQQ HHIPPWLACP SSIDLSSQLF SGNIFSRSLL 300 HNENQSASPS PNPNSTSFAP FEPPGTTGSQ HTSATALLQK AAQMGATMST QPSALPAPVL 360 RVPVPHQTHH MPAGSASTAG AAGSSSGLGL SSREDLASGF VHNNLSSFGN KAAAAANPAY 420 MEQFAASTTT TTTGPGTAPS LLHDMMMSSF SCTNGFDGSS SSFDDALNGI LNPKGYGDFH 480 HAQLSRNNHE TRDNNGGGAG GSNAGGSDGL TRDFLGLKTF PHSHRDFVNI AGLDQINPSS 540 SSTFGPQNQN PRTWQG

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP  60
GNPDPDAEVI ALSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKVER  120
KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI  180
CGTREYKCDC GKLFSRRDSF ITHRAFCDVL AEESARTITV NPLFSPSQQQ PNSSATHMLN  240
FPSHHHHQLQ SQGLQALQLQ AVKIEDNNQQ HHIPPWLACP SSIDLSSQLF SGNIFSRSLL  300
HNENQSASPS PNPNSTSFAP FEPPGTTGSQ HTSATALLQK AAQMGATMST QPSALPAPVL  360
RVPVPHQTHH MPAGSASTAG AAGSSSGLGL SSREDLASGF VHNNLSSFGN KAAAAANPAY  420
MEQFAASTTT TTTGPGTAPS LLHDMMMSSF SCTNGFDGSS SSFDDALNGI LNPKGYGDFH  480
HAQLSRNNHE TRDNNGGGAG GSNAGGSDGL TRDFLGLKTF PHSHRDFVNI AGLDQINPSS  540
SSTFGPQNQN PRTWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	122	KLKQRTNKVERKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-105	C2H2 family protein