PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57371.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 1177aa MW: 130665 Da PI: 6.1227

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	1086	1109	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + H+r+H GAY57371.1 1086 RCPheGCGKRFSSHKYAIIHQRVH 1109 69999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1177 aa Download sequence
MCFNCGEAAN FGTPQWLMVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFI SRVPRSLLPG 60 ARSSRLRDRQ KEERELLVKK AFVEDILKEN NILSVLLGRQ STFNAVLWNA DLLPCQSKES 120 QMPSANETVS TTPGETVPNN PYEKHNDHNN LLDEMNVYME ALNDPYMGDD DISRDFHIDS 180 GALACVACGI LGFPFMSVVQ LSERASIELL ADLVKEGPGV SELKNTHHHT NLDGSVKSSV 240 SDDLSLVPDI SLLQKDLSVP SITKSSRIWN TSNKYLRPRI FCLEHAAQIE EILQSKGGAE 300 ILVICHSDYQ KIKAHAAAVA EEIGSPFNYI DVPLDAASEE DLHLIDLAID DGELDECRED 360 WTSKLGINLR HCVKVRKNSP SMRVQHALSL GDLFSEKSLS SDFSKIKWQF RRSRSKIKLY 420 GRAHSKPCQN IEIKKDEVTG RKLDGATVKK EEKLIQYSRR KFKQKPDLST GACGDQVHPR 480 ELLPEVSAAT CDHLDGHNRS DFEINPDGTG NSGSISAGSI HSPIGMSEGL HDIPVREATS 540 NLSLNYSPSR VADSLATATL VVDSIVQNDT ESMKELNIEG DIFHMATCKS AEMQQNSGTD 600 VTSEETEISH HTVASNEGSI IMRSDQITES MTIKNEKCNL ASEGHCRKVA DKDVLMIEVS 660 GLANSASFRV ASSPLRSLDA QIENLAPDNS CMISEACDHL ISDNEVRQNV QSTNGGNDVE 720 PISCDHKLID EPPASTGESC EDMREISTAE SLQDNLQHER NIGNGSNEEL VSSSVTMMIQ 780 PTSAPMEISE VPSKECAAAD LLNVGTKQKL ISSCVSRMEV DQPSPLKVGG CSEVPIEICT 840 KEDSGADMTL DPRTRLQNHT TAEAIMDELV CNSSAQLEEN ERIPTSIAAC SEESNGIFAE 900 EKMDFEMTIG TQTKNAASEE PKPTSLIPID QPIPAVIRKY SRTRRESYSA EKFCNGNEAY 960 SSKDNKERGC NEPNLEDPSS SAGKGRKRNR ELERLTENKL NGSGFIRSPC EGLRSRAGKD 1020 AANTSEVDIR KIAEKRATKT MRNRESVPAP CQDKKKILKG HHRCDLDGCR MSFETKRELS 1080 LHKRNRCPHE GCGKRFSSHK YAIIHQRVHD DERPLKCPWK GCSMSFKWAW ARTEHIRVHT 1140 GERPYKCKFE GCGLSFRFVS DISRHRRKTG HYENLSA

Sequence ? help Back to Top

Protein Sequence Length: 1177 aa Download sequence

MCFNCGEAAN FGTPQWLMVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFI SRVPRSLLPG  60
ARSSRLRDRQ KEERELLVKK AFVEDILKEN NILSVLLGRQ STFNAVLWNA DLLPCQSKES  120
QMPSANETVS TTPGETVPNN PYEKHNDHNN LLDEMNVYME ALNDPYMGDD DISRDFHIDS  180
GALACVACGI LGFPFMSVVQ LSERASIELL ADLVKEGPGV SELKNTHHHT NLDGSVKSSV  240
SDDLSLVPDI SLLQKDLSVP SITKSSRIWN TSNKYLRPRI FCLEHAAQIE EILQSKGGAE  300
ILVICHSDYQ KIKAHAAAVA EEIGSPFNYI DVPLDAASEE DLHLIDLAID DGELDECRED  360
WTSKLGINLR HCVKVRKNSP SMRVQHALSL GDLFSEKSLS SDFSKIKWQF RRSRSKIKLY  420
GRAHSKPCQN IEIKKDEVTG RKLDGATVKK EEKLIQYSRR KFKQKPDLST GACGDQVHPR  480
ELLPEVSAAT CDHLDGHNRS DFEINPDGTG NSGSISAGSI HSPIGMSEGL HDIPVREATS  540
NLSLNYSPSR VADSLATATL VVDSIVQNDT ESMKELNIEG DIFHMATCKS AEMQQNSGTD  600
VTSEETEISH HTVASNEGSI IMRSDQITES MTIKNEKCNL ASEGHCRKVA DKDVLMIEVS  660
GLANSASFRV ASSPLRSLDA QIENLAPDNS CMISEACDHL ISDNEVRQNV QSTNGGNDVE  720
PISCDHKLID EPPASTGESC EDMREISTAE SLQDNLQHER NIGNGSNEEL VSSSVTMMIQ  780
PTSAPMEISE VPSKECAAAD LLNVGTKQKL ISSCVSRMEV DQPSPLKVGG CSEVPIEICT  840
KEDSGADMTL DPRTRLQNHT TAEAIMDELV CNSSAQLEEN ERIPTSIAAC SEESNGIFAE  900
EKMDFEMTIG TQTKNAASEE PKPTSLIPID QPIPAVIRKY SRTRRESYSA EKFCNGNEAY  960
SSKDNKERGC NEPNLEDPSS SAGKGRKRNR ELERLTENKL NGSGFIRSPC EGLRSRAGKD  1020
AANTSEVDIR KIAEKRATKT MRNRESVPAP CQDKKKILKG HHRCDLDGCR MSFETKRELS  1080
LHKRNRCPHE GCGKRFSSHK YAIIHQRVHD DERPLKCPWK GCSMSFKWAW ARTEHIRVHT  1140
GERPYKCKFE GCGLSFRFVS DISRHRRKTG HYENLSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-146	C2H2 family protein