PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57325.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 438aa MW: 49000.7 Da PI: 6.8762

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	250	297	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq GAY57325.1 250 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 297 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MMNRGTLLPE MLHCADITVL ERQRARLKWQ QDQLQQPQQQ QELQQQQHQE QQQQQQQEVR 60 YFSELSQLIS QGYDEGGLMM RQQVKPDPAF ENGWPDLGKI VAPAAGYGFG PGFEASYAIS 120 RTSSSPPAVV PEAVDVKGKV SVAALNEKVS AAVGRESFKK RKADKVQNTK VAVEENTKDK 180 RMKGSAEEGD SSKITEQNNN NNNNNNNRSN SNNNNNKNNK ETSADTSKAS EVQKPDYIHV 240 RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCNKIT GKAGMLDEII NYVQSLQRQV 300 EFLSMKLAAV NPRLDFNVDN LFAKEAFPVC PSNFPTIGMS SEMTHPAAYL HQFNSLQQQA 360 VSCSGLDLGI INPSEMGLRR TISAPVSAPE TFIDSSCYPH LQPSSNWDSD FQNFYNVASF 420 PSQQFTGTLE ASNLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MMNRGTLLPE MLHCADITVL ERQRARLKWQ QDQLQQPQQQ QELQQQQHQE QQQQQQQEVR  60
YFSELSQLIS QGYDEGGLMM RQQVKPDPAF ENGWPDLGKI VAPAAGYGFG PGFEASYAIS  120
RTSSSPPAVV PEAVDVKGKV SVAALNEKVS AAVGRESFKK RKADKVQNTK VAVEENTKDK  180
RMKGSAEEGD SSKITEQNNN NNNNNNNRSN SNNNNNKNNK ETSADTSKAS EVQKPDYIHV  240
RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCNKIT GKAGMLDEII NYVQSLQRQV  300
EFLSMKLAAV NPRLDFNVDN LFAKEAFPVC PSNFPTIGMS SEMTHPAAYL HQFNSLQQQA  360
VSCSGLDLGI INPSEMGLRR TISAPVSAPE TFIDSSCYPH LQPSSNWDSD FQNFYNVASF  420
PSQQFTGTLE ASNLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	7e-62	bHLH family protein