PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57195.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 672aa MW: 74400.7 Da PI: 7.1417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.5e-14	7	56	36	87
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea GAY57195.1 7 RKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 56 7899*****************************866665..*****85 PP
2	trihelix	104	1.1e-32	400	485	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s m++ g++r++k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a GAY57195.1 400 RWPKVEVLALIKLRSGLEHRYQEAGPKGPLWEEISVGMQRMGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDAKTCPYFHELDA 485 8******************************************************************97.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MGARGGRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYKF FSQLEALYSS 60 PTSTSTSTAT TSNVSASLPK PVTTVADTST LDVAPVSVGI PMPISSSVRI PTSPITLTCF 120 PYHDLRSTLI PAPSSAVNVP GSVTTPVPPT ATTSTTPVGI SFSSKSSSSP ETEDDDDDVM 180 DFEGQPSNTA GTSNRKRKRQ TSSSHRMMAF FEGLMKQVMQ KQEAMQQSFL EVIEKRERDR 240 MIREEAWKRQ EMSRLAREHE LMAQERAISA SRDASIINFL QKITGQTIQL PPAITIPAAP 300 PPPPPQPQSP SQAVPVATNT TQSHHMPPPE RRDIQQHHHR HQQIQSSAAE AVTARHQQPS 360 GTVSTSIPSQ VVMAVPEQQV PPSDHQEIGS GGNLEPASSR WPKVEVLALI KLRSGLEHRY 420 QEAGPKGPLW EEISVGMQRM GYNRNAKRCK EKWENINKYF KKVKESNKRR PEDAKTCPYF 480 HELDALYRKK IIGVGGTSTS SQNRPEERHQ SQSEQQHQQE NVNPVTNPQE SSINVLPAPL 540 LITQAHSDSE NKNGNAQASN VGVTGSLFGE GNLGASKKPE DIVKELMNQQ GTQQKQQQPQ 600 ASIVDDQFDK VEESNMGSES DNMEYEEEDE REDDEESEED SNKMANYKVE FQRQNTSNGG 660 GNGAPSFLAM VQ

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MGARGGRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYKF FSQLEALYSS  60
PTSTSTSTAT TSNVSASLPK PVTTVADTST LDVAPVSVGI PMPISSSVRI PTSPITLTCF  120
PYHDLRSTLI PAPSSAVNVP GSVTTPVPPT ATTSTTPVGI SFSSKSSSSP ETEDDDDDVM  180
DFEGQPSNTA GTSNRKRKRQ TSSSHRMMAF FEGLMKQVMQ KQEAMQQSFL EVIEKRERDR  240
MIREEAWKRQ EMSRLAREHE LMAQERAISA SRDASIINFL QKITGQTIQL PPAITIPAAP  300
PPPPPQPQSP SQAVPVATNT TQSHHMPPPE RRDIQQHHHR HQQIQSSAAE AVTARHQQPS  360
GTVSTSIPSQ VVMAVPEQQV PPSDHQEIGS GGNLEPASSR WPKVEVLALI KLRSGLEHRY  420
QEAGPKGPLW EEISVGMQRM GYNRNAKRCK EKWENINKYF KKVKESNKRR PEDAKTCPYF  480
HELDALYRKK IIGVGGTSTS SQNRPEERHQ SQSEQQHQQE NVNPVTNPQE SSINVLPAPL  540
LITQAHSDSE NKNGNAQASN VGVTGSLFGE GNLGASKKPE DIVKELMNQQ GTQQKQQQPQ  600
ASIVDDQFDK VEESNMGSES DNMEYEEEDE REDDEESEED SNKMANYKVE FQRQNTSNGG  660
GNGAPSFLAM VQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	23	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-49	Trihelix family protein