PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY57194.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 791aa MW: 86292.5 Da PI: 6.0733

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY57194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.7	4.4e-30	91	175	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+ qe+laL+++r++m+ ++r++ k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea GAY57194.1 91 RWPSQETLALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 175 8*******************************************************************866665..*****85 PP
2	trihelix	103.6	1.4e-32	519	604	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s m++ g++r++k+Ckekwen+nk++kk+ke++k+r +e+ +tcpyf++l+a GAY57194.1 519 RWPKVEVLALIKLRSGLEHRYQEAGPKGPLWEEISVGMQRMGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDAKTCPYFHELDA 604 8******************************************************************97.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence
MQQGGGGGGD GEGGGGGGGT QSQYGEMATT STATAAAAAA HIDMGQQPVE AASPISSRPP 60 ASASNLDELM RLSGGDDDEG DRGGGVSSGN RWPSQETLAL LKIRSDMDAA FRDATVKGPL 120 WEDVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF SQLEALYSSP 180 TSTSTSTATT SNVSASLPKP VTTVADTSTL DVAPVSVGIP MPISSSVRIP TSPITLTCFP 240 YHDLRSTLIP APSSAVNVPG SVTTPVPPTA TTSTTPVGIS FSSKSSSSPE TEDDDDDVMD 300 FEGQPSNTAG TSNRKRKRQT SSSHRMMAFF EGLMKQVMQK QEAMQQSFLE VIEKRERDRM 360 IREEAWKRQE MSRLAREHEL MAQERAISAS RDASIINFLQ KITGQTIQLP PAITIPAAPP 420 PPPPQPQSPS QAVPVATNTT QSHHMPPPER RDIQQHHHRH QQIQSSAAEA VTARHQQPSG 480 TVSTSIPSQV VMAVPEQQVP PSDHQEIGSG GNLEPASSRW PKVEVLALIK LRSGLEHRYQ 540 EAGPKGPLWE EISVGMQRMG YNRNAKRCKE KWENINKYFK KVKESNKRRP EDAKTCPYFH 600 ELDALYRKKI IGVGGTSTSS QNRPEERHQS QSEQQHQQEN VNPVTNPQES SINVLPAPLL 660 ITQAHSDSEN KNGNAQASNV GVTGSLFGEG NLGASKKPED IVKELMNQQG TQQKQQQPQA 720 SIVDDQFDKV EESNMGSESD NMEYEEEDER EDDEESEEDS NKMANYKVEF QRQNTSNGGG 780 NGAPSFLAMV Q

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence

MQQGGGGGGD GEGGGGGGGT QSQYGEMATT STATAAAAAA HIDMGQQPVE AASPISSRPP  60
ASASNLDELM RLSGGDDDEG DRGGGVSSGN RWPSQETLAL LKIRSDMDAA FRDATVKGPL  120
WEDVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG RQDGKSYKFF SQLEALYSSP  180
TSTSTSTATT SNVSASLPKP VTTVADTSTL DVAPVSVGIP MPISSSVRIP TSPITLTCFP  240
YHDLRSTLIP APSSAVNVPG SVTTPVPPTA TTSTTPVGIS FSSKSSSSPE TEDDDDDVMD  300
FEGQPSNTAG TSNRKRKRQT SSSHRMMAFF EGLMKQVMQK QEAMQQSFLE VIEKRERDRM  360
IREEAWKRQE MSRLAREHEL MAQERAISAS RDASIINFLQ KITGQTIQLP PAITIPAAPP  420
PPPPQPQSPS QAVPVATNTT QSHHMPPPER RDIQQHHHRH QQIQSSAAEA VTARHQQPSG  480
TVSTSIPSQV VMAVPEQQVP PSDHQEIGSG GNLEPASSRW PKVEVLALIK LRSGLEHRYQ  540
EAGPKGPLWE EISVGMQRMG YNRNAKRCKE KWENINKYFK KVKESNKRRP EDAKTCPYFH  600
ELDALYRKKI IGVGGTSTSS QNRPEERHQS QSEQQHQQEN VNPVTNPQES SINVLPAPLL  660
ITQAHSDSEN KNGNAQASNV GVTGSLFGEG NLGASKKPED IVKELMNQQG TQQKQQQPQA  720
SIVDDQFDKV EESNMGSESD NMEYEEEDER EDDEESEEDS NKMANYKVEF QRQNTSNGGG  780
NGAPSFLAMV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-49	Trihelix family protein