PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56795.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 511aa MW: 55326.1 Da PI: 5.9546

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l GAY56795.1 23 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLMRCGKSCRLRWANHL 70 79******************************************9986 PP
2	Myb_DNA-binding	51.6	2.1e-16	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++++++++++lG++ W++ a+ ++ gRt++++k++w++ GAY56795.1 76 KGSFSPEEEKIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 119 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MVSGGGGAEL GRGHHHHHQS LKKGPWTAAE DAILMEYVKK HGEGNWNAVQ KNSGLMRCGK 60 SCRLRWANHL RPNLKKGSFS PEEEKIIIEL HAKLGNKWAR MAAQLPGRTD NEIKNYWNTR 120 MKRRQRAGLP IYPQEIQDKA AAAFHLHQHH KRPQNQISPS PPAALLITSQ NPAYNNASLS 180 AMFNSFNFQS PTNLPLQNQA PGSCLSNPNN HAFQLFFDSA NANAGGFSLP PYHPPSSTTS 240 LMNENIQTQT TMQMPPFKVN SAPGNHEMSF SAMISQPIDF GTGLESELPS SQIPAVPKQA 300 SAPASSGSSG GFCAVGISST TDNNNDYQIS QKATCGGNSG LLDDLVQESN KISSNEKFKG 360 QFESFSDAGD KGKSVVDASS ADEEVNEGVE SMMANAADNN NQWDDFSSSQ SSIEMNKTNQ 420 EPLEEMQSMD DDLMSLLNNF PLSVPLPEWY PGTSTETSNV SSSSMTGGNQ EATTTDHQPN 480 TPPAPAPTTA ASPDLQWSLG SCCWNNMPGI C

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MVSGGGGAEL GRGHHHHHQS LKKGPWTAAE DAILMEYVKK HGEGNWNAVQ KNSGLMRCGK  60
SCRLRWANHL RPNLKKGSFS PEEEKIIIEL HAKLGNKWAR MAAQLPGRTD NEIKNYWNTR  120
MKRRQRAGLP IYPQEIQDKA AAAFHLHQHH KRPQNQISPS PPAALLITSQ NPAYNNASLS  180
AMFNSFNFQS PTNLPLQNQA PGSCLSNPNN HAFQLFFDSA NANAGGFSLP PYHPPSSTTS  240
LMNENIQTQT TMQMPPFKVN SAPGNHEMSF SAMISQPIDF GTGLESELPS SQIPAVPKQA  300
SAPASSGSSG GFCAVGISST TDNNNDYQIS QKATCGGNSG LLDDLVQESN KISSNEKFKG  360
QFESFSDAGD KGKSVVDASS ADEEVNEGVE SMMANAADNN NQWDDFSSSQ SSIEMNKTNQ  420
EPLEEMQSMD DDLMSLLNNF PLSVPLPEWY PGTSTETSNV SSSSMTGGNQ EATTTDHQPN  480
TPPAPAPTTA ASPDLQWSLG SCCWNNMPGI C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-75	MYB family protein