PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56743.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

RAV

Protein Properties

Length: 367aa MW: 41628 Da PI: 5.7223

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.3	1e-09	43	90	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV ++g W A+I+ + +r++lg+f ++++Aa a++ a+ +l+ GAY56743.1 43 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIRLR 90 799*6.666899999......44******99*********998 PP
2	B3	89.4	2.8e-28	134	230	1	85
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ltpsdv+k++rlv+pkk+a ++ +++k+ +++l++ d+s + W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D++ F+l GAY56743.1 134 FQKELTPSDVGKLNRLVIPKKYAVKYfpqiserveehaENDKADDVQLVFHDKSMKLWKFRYCYWKSSQSFVFTRGWNRFVKENQLKANDTICFYLC 230 99******************************999988899**************************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRLRHTS AVSKFKGVVP QQNGHWGAQI 60 YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI 120 NMIRDGSYSS RQLFQKELTP SDVGKLNRLV IPKKYAVKYF PQISERVEEH AENDKADDVQ 180 LVFHDKSMKL WKFRYCYWKS SQSFVFTRGW NRFVKENQLK ANDTICFYLC ELRDITKGTK 240 TFCMIDANKG ENSGASAEVS GPYVDMKVDL QLQLGQNIVD DKKENKVEED DNGNEIEATE 300 EVELKAPSST SDSERKLFKL FGGNGYRLIV PIAQWLLSFY MSYGQGDGLT ISEGLGVVLD 360 EPVLSIA

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MEEEMLSIVS NGETNVIPEL SDSISSTPLI PATKRLRHTS AVSKFKGVVP QQNGHWGAQI  60
YANHQRIWLG TFKSEKDAAM AYDSAAIRLR SVDSHRNFPW TKITIEEPNF QSHYSTEAVI  120
NMIRDGSYSS RQLFQKELTP SDVGKLNRLV IPKKYAVKYF PQISERVEEH AENDKADDVQ  180
LVFHDKSMKL WKFRYCYWKS SQSFVFTRGW NRFVKENQLK ANDTICFYLC ELRDITKGTK  240
TFCMIDANKG ENSGASAEVS GPYVDMKVDL QLQLGQNIVD DKKENKVEED DNGNEIEATE  300
EVELKAPSST SDSERKLFKL FGGNGYRLIV PIAQWLLSFY MSYGQGDGLT ISEGLGVVLD  360
EPVLSIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	2e-96	RAV family protein