PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56739.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 569aa MW: 60568.1 Da PI: 7.1023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.5e-12	317	362	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq GAY56739.1 317 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 362 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
QHTKFPLSLS LSLLPVLTYL VFNIHQKNGF HSLEETLDSS NLNFHIVKTY SQEIKMQPCS 60 SSGEMQGISS LLSNGSHEQQ SQIHQSATFD PTSQDDFLEQ MLSSLPSCSW TDLKSPWGVV 120 DLNPNNNNNN INNKQPRDLS DETAPSTTQE NNVPAGFQFD ESMILASKMR QHQISGNTGS 180 GNNNSAAAKF MMQQQQQIMM AAARGGIGLP LSLGNGGDND IVDVSSFKSQ QGGDGSVQAL 240 YNGFTGSLHG STQPQHFHHL QGGSMPGQTF GAPGPVMNQT QAQASGSTGG GGGGGNTPAQ 300 QPKQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF 360 LQLQVKVLSM SRLGGAAAVA PLVADMSSEN TLSPKTNHTH PPTHTHTHDS LAKRNKSLIN 420 PQTQSPQNDN LKAARGGGGD CIQANGRNPN GAQTTSANDS LTVTEHQVAK LMEEDMGSAM 480 QYLQGKGLCL MPISLATAIS TATCHSRNPI ISTSNNNNNN GNPHHNPLLQ SNGEGPTSPS 540 MSVLTVQSAT MGNGGADGSV KDAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

QHTKFPLSLS LSLLPVLTYL VFNIHQKNGF HSLEETLDSS NLNFHIVKTY SQEIKMQPCS  60
SSGEMQGISS LLSNGSHEQQ SQIHQSATFD PTSQDDFLEQ MLSSLPSCSW TDLKSPWGVV  120
DLNPNNNNNN INNKQPRDLS DETAPSTTQE NNVPAGFQFD ESMILASKMR QHQISGNTGS  180
GNNNSAAAKF MMQQQQQIMM AAARGGIGLP LSLGNGGDND IVDVSSFKSQ QGGDGSVQAL  240
YNGFTGSLHG STQPQHFHHL QGGSMPGQTF GAPGPVMNQT QAQASGSTGG GGGGGNTPAQ  300
QPKQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF  360
LQLQVKVLSM SRLGGAAAVA PLVADMSSEN TLSPKTNHTH PPTHTHTHDS LAKRNKSLIN  420
PQTQSPQNDN LKAARGGGGD CIQANGRNPN GAQTTSANDS LTVTEHQVAK LMEEDMGSAM  480
QYLQGKGLCL MPISLATAIS TATCHSRNPI ISTSNNNNNN GNPHHNPLLQ SNGEGPTSPS  540
MSVLTVQSAT MGNGGADGSV KDAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	327	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-55	bHLH family protein