PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56598.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 691aa MW: 76880.8 Da PI: 5.718

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	78	100	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C Gd+C F Hgp GAY56598.1 78 VPCIFFQK-GLCIKGDKCAFLHGP 100 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MGSECEYRHS EYARVNPRDC YFWLNGNCLN PKCGFRHPPL DGLIGTQMAV STGSYFPSSH 60 SATMPAAHAS NNSGKQAVPC IFFQKGLCIK GDKCAFLHGP NTAVNKAPQP TAAAPANEPP 120 TLKKASGVLQ KCTQEQKVPP ANVPKAVVVR PEANKHTHKA ETSFPRNAAG NERNAPPPSG 180 TDGEFPRYKA TNVPPVINGN SLIRSNRLHQ AHALDDQSFQ HGKDADEFLR ESSPGFDVLV 240 DDELRDSDYY HDEDQYGRTR GHEGRDLNSV NEYDIGRSVD YTSLTEMGRE TFRDPREYDI 300 GSYDHISMQG QYAWEQHMAA SDRVLVGDSS NQERRSYSKS ETHNQINESD LRYRLSKHRR 360 ANGLRSVVSP DYAPDNQLEE QSHRISTRRD SRHLASQESS LSSRLHGRIK PPRRSLVSGS 420 DLRSERDLER GRNWGSVSPG RPQTSHQGRL RDRIKGRVED DYSGGRNFRG PRMMRREMMD 480 DRDADFAGPK SLSELKGKKN AESKEQQSLR KRKSLEDHRQ PEGGLSFDGP MPLSEILKRK 540 RGAGGATSAS TEKSSANMEV ENQKESQGSL VGSSNNTAAQ SAVSTVSKEV SNYKEAGAVK 600 ETEGKNEATH DKSSQLPNAS EVEAEDGMIA EEGIEDHDLE ADDLRDGEYE YEQGDEGDYN 660 YEEGENAEGE EEYLEDEDGD DFAKKIGVMF S

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MGSECEYRHS EYARVNPRDC YFWLNGNCLN PKCGFRHPPL DGLIGTQMAV STGSYFPSSH  60
SATMPAAHAS NNSGKQAVPC IFFQKGLCIK GDKCAFLHGP NTAVNKAPQP TAAAPANEPP  120
TLKKASGVLQ KCTQEQKVPP ANVPKAVVVR PEANKHTHKA ETSFPRNAAG NERNAPPPSG  180
TDGEFPRYKA TNVPPVINGN SLIRSNRLHQ AHALDDQSFQ HGKDADEFLR ESSPGFDVLV  240
DDELRDSDYY HDEDQYGRTR GHEGRDLNSV NEYDIGRSVD YTSLTEMGRE TFRDPREYDI  300
GSYDHISMQG QYAWEQHMAA SDRVLVGDSS NQERRSYSKS ETHNQINESD LRYRLSKHRR  360
ANGLRSVVSP DYAPDNQLEE QSHRISTRRD SRHLASQESS LSSRLHGRIK PPRRSLVSGS  420
DLRSERDLER GRNWGSVSPG RPQTSHQGRL RDRIKGRVED DYSGGRNFRG PRMMRREMMD  480
DRDADFAGPK SLSELKGKKN AESKEQQSLR KRKSLEDHRQ PEGGLSFDGP MPLSEILKRK  540
RGAGGATSAS TEKSSANMEV ENQKESQGSL VGSSNNTAAQ SAVSTVSKEV SNYKEAGAVK  600
ETEGKNEATH DKSSQLPNAS EVEAEDGMIA EEGIEDHDLE ADDLRDGEYE YEQGDEGDYN  660
YEEGENAEGE EEYLEDEDGD DFAKKIGVMF S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	510	540	RKRKSLEDHRQPEGGLSFDGPMPLSEILKRK