PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56540.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARR-B

Protein Properties

Length: 674aa MW: 73252.5 Da PI: 6.457

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	80.8	1.6e-25	220	270	1	52
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ GAY56540.1 220 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQE 270 79*****************.*************************974 PP
2	Myb_DNA-binding	35.9	1.8e-11	222	269	1	45
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++q GAY56540.1 222 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQ 269 678********************************************9 PP
3	Response_reg	79.1	1.6e-26	36	144	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++l+q+l++ y +v++++++ al++l+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a g + + + ++ Ga GAY56540.1 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALNILRERKgcFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGAC 130 89*******************.***************************************6654.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + GAY56540.1 131 DYLIKPIREEELKN 144 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV 60 TTCSQAAVAL NILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADGRVSA 120 VMRGIRHGAC DYLIKPIREE ELKNIWQHVV RKRWNENKEH ENSGSLEETD HHKRGSDEIE 180 YASSVNEGTE GTFKAQRKRI SAKEEDDGEL ESDDPSTTKK PRVVWSVELH QQFVSAVNQL 240 GIDKAVPKRI LELMNVPGLT RENVASHLQE INLQKFRLYL KRLNGVSQQG GITNSFCAPI 300 ETNVKLGSLG RFDIQALAAS GQIPPQTLAA LHAELLGRPT GNLVTAVDQP ALLQATLQGP 360 KCIPADHGVA FGQQLVKCQS NVPENLPQSI ISVDDASTGF GVWASNSLGA VASTSNLGGL 420 NPQNGNMLMD ILHQQQQKQQ NQQSQQQSTL SETNRSISVQ PSCLVVPSRS SASFQAGNSP 480 ASVNQSCSFN RGAVVDYSLL SSQSNNSSLN MGQISDGDIK TTGVITGYLA PGSLSPSASS 540 CSVTADNTSS QQVQNSNIAF RAARQVPGLV SNVGDIQGSY GAKSGEVFDL GSLRNHGFMG 600 KGNCIPSRLA VDEFESPMNN LNYGNIYLDN NANKVKEEPN LEFVDNAKVG IPMYQQFVFS 660 REHKYHPIFM KIKS

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV  60
TTCSQAAVAL NILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADGRVSA  120
VMRGIRHGAC DYLIKPIREE ELKNIWQHVV RKRWNENKEH ENSGSLEETD HHKRGSDEIE  180
YASSVNEGTE GTFKAQRKRI SAKEEDDGEL ESDDPSTTKK PRVVWSVELH QQFVSAVNQL  240
GIDKAVPKRI LELMNVPGLT RENVASHLQE INLQKFRLYL KRLNGVSQQG GITNSFCAPI  300
ETNVKLGSLG RFDIQALAAS GQIPPQTLAA LHAELLGRPT GNLVTAVDQP ALLQATLQGP  360
KCIPADHGVA FGQQLVKCQS NVPENLPQSI ISVDDASTGF GVWASNSLGA VASTSNLGGL  420
NPQNGNMLMD ILHQQQQKQQ NQQSQQQSTL SETNRSISVQ PSCLVVPSRS SASFQAGNSP  480
ASVNQSCSFN RGAVVDYSLL SSQSNNSSLN MGQISDGDIK TTGVITGYLA PGSLSPSASS  540
CSVTADNTSS QQVQNSNIAF RAARQVPGLV SNVGDIQGSY GAKSGEVFDL GSLRNHGFMG  600
KGNCIPSRLA VDEFESPMNN LNYGNIYLDN NANKVKEEPN LEFVDNAKVG IPMYQQFVFS  660
REHKYHPIFM KIKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	1e-123	ARR-B family protein