PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY56340.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HSF

Protein Properties

Length: 355aa MW: 39720 Da PI: 6.3783

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY56340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.4	1.8e-36	13	105	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ll++i GAY56340.1 13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKNIV 100 9**************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ GAY56340.1 101 RRKHS 105 *9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MEPNNTNNVI APFVMKTYQM VNDPTTDSLI SWGKANNSFI VVDPLDFSQR ILPAYFKHNN 60 FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIV RRKHSSNRSA HHMMMRGGAG 120 DQDLDDEEIV MEIARLRQEQ KSLDEELQGM NKRLEATERR PEQMMAFLYK VVEDPDLLPR 180 IIMEKESTTN RNNYYLGDKK RRLMISSSSQ QQQQPSNSSS SGMAASSSIK SEEEEVGNIG 240 VISSSSPDSG FDNSNNNNSN NFCQSSPSPD SNNNNNNYSV SSSGWLLGQS RQVMNSYGWA 300 AIPSPVSAIP ATARNSTSSG TSTNGQMGYF GEMVTGVESR PPTPPYPFSL LGGGF

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MEPNNTNNVI APFVMKTYQM VNDPTTDSLI SWGKANNSFI VVDPLDFSQR ILPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIV RRKHSSNRSA HHMMMRGGAG  120
DQDLDDEEIV MEIARLRQEQ KSLDEELQGM NKRLEATERR PEQMMAFLYK VVEDPDLLPR  180
IIMEKESTTN RNNYYLGDKK RRLMISSSSQ QQQQPSNSSS SGMAASSSIK SEEEEVGNIG  240
VISSSSPDSG FDNSNNNNSN NFCQSSPSPD SNNNNNNYSV SSSGWLLGQS RQVMNSYGWA  300
AIPSPVSAIP ATARNSTSSG TSTNGQMGYF GEMVTGVESR PPTPPYPFSL LGGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-94	HSF family protein